EY728779

Overview
NameEY728779
Unique NameEY728779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.106e-28
Identity = 81/212 (38.21%), Postives = 126/212 (59.43%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL------HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIH 653
            P   KTL+A+AVA+E    F  V    L SK+ GESEK VR LF  AR  AP+ IF DEID + + RG  S+    S RV ++LLV++DG+           V V+AATN P  ID AL R  R ++ +Y+  P+   R ++ +I+L+++  ++DVN+ ++A   EG +GADI+ +CR+A++ A+   ++   +T +     IR++   E+H
Sbjct:  246 PGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRG-TSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDASLMAMRRRIEG--LTPEE----IRNLPKDEMH 448          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.750e-28
Identity = 77/198 (38.89%), Postives = 114/198 (57.58%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN----VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLK 617
            P   KT++ARAVA EA + F  + G +    +VG   K VR LFA AR  APSIIF DE+D +   R       +   + ++QLLV+LDG  +  +    V  I ATN P+ +DPAL RPGRFDR ++V  P+   R  I   H R +P   DV++  +A  + G  GAD++ +  +AA+ A  +NL ++ ++M+ L+
Sbjct:  309 PGTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKRNARD--AAHMRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAAVYA-SKNL-STAVSMRDLE 502          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.750e-28
Identity = 72/182 (39.56%), Postives = 113/182 (62.09%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD-RVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAI 572
            P   K+ +A+AVA+EAG  F ++   +L SKW+GESE+ VR LF  AR   PSIIF DEID L    G  S+G S S  R+ ++ LV+++G+      V V+ ATN P  +D A+ R  RF++ +Y+  PN   R  +F +++ KIP   +  + +ELA +++G +G+DIS++ R+A +  +
Sbjct:  171 PGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLC---GSRSEGESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRR--RFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIMEPV 347          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_DROWI (Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.750e-28
Identity = 82/211 (38.86%), Postives = 124/211 (58.77%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN---VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN-IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 656
            P   KTL+ARAVA+E    FL +    L SK+VG+ EK VR+LFA AR   PSIIF DE+D L + R   S+    S R+ ++ LVE DGL    +   + V+AATNRP ++D A LR  RF + +YV  P+E  RE +    L+K     D   +R LA ++EG +G+D++ + ++AA+  I E L+  ++    + +A+R +   + H+
Sbjct:  544 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER--SSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITEGYSGSDLTALAKDAALEPIRE-LNVEQVKCLDI-SAMRPITEKDFHN 748          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_DROAN (Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.750e-28
Identity = 83/211 (39.34%), Postives = 124/211 (58.77%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN---VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN-IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 656
            P   KTL+ARAVA+E    FL +    L SK+VG+ EK VR+LFA AR   PSIIF DE+D L + R   S+    S R+ ++ LVE DGL    +   + V+AATNRP ++D A LR  RF + +YV  P+E  RE +    L+K     D   +R LA  ++G +G+D++ + ++AA+  I E L+  ++    + +A+R +  S+ HS
Sbjct:  537 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER--SSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLSRLLQKQGSPLDTEALRRLAKTTDGYSGSDLTALAKDAALEPIRE-LNVEQVKCLDI-SAMRAITESDFHS 741          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_DROYA (Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28
Identity = 82/211 (38.86%), Postives = 123/211 (58.29%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN---VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN-IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 656
            P   KTL+ARAVA+E    FL +    L SK+VG+ EK VR+LFA AR   PSIIF DE+D L + R   S     S R+ ++ LVE DGL    +   + V+AATNRP ++D A LR  RF + +YV  P+E  RE +    L+K     D   +R LA +++G +G+D++ + ++AA+  I E L+  ++    + +A+R +   + HS
Sbjct:  525 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER--SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE-LNVEQVKCLDI-SAMRAITEQDFHS 729          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_DROSE (Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28
Identity = 82/211 (38.86%), Postives = 123/211 (58.29%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN---VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN-IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 656
            P   KTL+ARAVA+E    FL +    L SK+VG+ EK VR+LFA AR   PSIIF DE+D L + R   S     S R+ ++ LVE DGL    +   + V+AATNRP ++D A LR  RF + +YV  P+E  RE +    L+K     D   +R LA +++G +G+D++ + ++AA+  I E L+  ++    + +A+R +   + HS
Sbjct:  525 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER--SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE-LNVEQVKCLDI-SAMRAITEQDFHS 729          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_DROME (Spastin OS=Drosophila melanogaster GN=spas PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28
Identity = 82/211 (38.86%), Postives = 123/211 (58.29%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN---VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN-IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 656
            P   KTL+ARAVA+E    FL +    L SK+VG+ EK VR+LFA AR   PSIIF DE+D L + R   S     S R+ ++ LVE DGL    +   + V+AATNRP ++D A LR  RF + +YV  P+E  RE +    L+K     D   +R LA +++G +G+D++ + ++AA+  I E L+  ++    + +A+R +   + HS
Sbjct:  525 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER--SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE-LNVEQVKCLDI-SAMRAITEQDFHS 729          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_DROER (Spastin OS=Drosophila erecta GN=spas PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28
Identity = 82/211 (38.86%), Postives = 123/211 (58.29%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN---VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN-IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 656
            P   KTL+ARAVA+E    FL +    L SK+VG+ EK VR+LFA AR   PSIIF DE+D L + R   S     S R+ ++ LVE DGL    +   + V+AATNRP ++D A LR  RF + +YV  P+E  RE +    L+K     D   +R LA +++G +G+D++ + ++AA+  I E L+  ++    + +A+R +   + HS
Sbjct:  525 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER--SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE-LNVEQVKCLDI-SAMRAITEQDFHS 729          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28
Identity = 80/242 (33.06%), Postives = 129/242 (53.31%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNF-LAVKGPELFSKWVGESEKAVRSLFAKARA--------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS----SDVNIRELACLSEGCTGADISLICREAA------------ISAIEENLDASRITMQHLKTAIRHVQPSEIHSXQELSAKSKG 686
            P   KTL+AR +           V GPE+ +K+VG+SE+ VR LFA A          +   II FDE+D +   RG       V D+V++QLL ++DG+ Q  N+ VI  TNR D ID ALLRPGR +  + +  P+E  R +I +IH  ++  +    +DV++ ELA L++  +GA+I+ + + A+             +A+  NL+  ++       A+  V+P+   S +EL ++ +G
Sbjct:  313 PGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICKKRGSSGGDTGVGDQVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLIKSASSFAFYRHIKVGTTAAVSGNLENIKVNRNDFLNALSEVRPAYGVSEEELESRVQG 554          
The following BLAST results are available for this feature:
BLAST of EY728779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
KTNA1_DANRE2.106e-2838.21Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
YME1_SCHPO2.750e-2838.89Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
VPS4_SCHPO2.750e-2839.56Suppressor protein of bem1/bed5 double mutants OS=... [more]
SPAST_DROWI2.750e-2838.86Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1[more]
SPAST_DROAN2.750e-2839.34Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1[more]
SPAST_DROYA3.591e-2838.86Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1[more]
SPAST_DROSE3.591e-2838.86Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1[more]
SPAST_DROME3.591e-2838.86Spastin OS=Drosophila melanogaster GN=spas PE=1 SV... [more]
SPAST_DROER3.591e-2838.86Spastin OS=Drosophila erecta GN=spas PE=3 SV=1[more]
SEC18_SCHPO3.591e-2833.06Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-E03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728779 ID=EY728779; Name=EY728779; organism=Citrus sinensis; type=EST; length=853bp
CCACGCGTCCGCTGGGATTTTGATGTTTGGTCCTCCCGNGTTGTAGCAAA
ACCCTCATGGCACGTGCAGTAGCTTCAGAAGCAGGGCTGAACTTCCTTGC
AGTGAAGGGTCCAGAGCTTTTTAGCAAATGGGTTGGTGAATCCGAGAAAG
CAGTGCGATCGCTGTTTGCAAAGGCTAGGGCCAATGCTCCATCAATCATA
TTTTTTGATGAAATTGATGGTCTTGCTGCCATTCGTGGGAAGGAAAGTGA
TGGGGTTTCTGTTTCTGATCGGGTTATGAGTCAACTTCTTGTTGAATTGG
ATGGCCTGCATCAAAGAGTTAATGTTACTGTTATTGCTGCTACAAATCGA
CCAGACAAGATTGATCCTGCCCTGTTGCGACCAGGACGCTTTGACAGGCT
TCTGTATGTGGGACCTCCAAATGAGACTGACCGAGAAGAAATATTCCGAA
TTCATTTGCGTAAAATTCCTTGCAGCTCTGATGTAAACATAAGAGAACTG
GCTTGCCTCTCAGAAGGCTGTACTGGGGCTGATATATCATTAATCTGCCG
AGAGGCAGCCATTTCAGCCATTGAGGAGAACCTCGATGCATCAAGAATAA
CAATGCAACACTTGAAGACTGCAATTAGACACGTACAACCATCGGAGATT
CATTCTTANCAGGAGCTCTCAGCTAAGTCCAAAGGCTTGTACACTCTAAT
GCGGAGGCTGATGAATCANGATATCACCTGCGCCCGAATAAATCATCGGA
TTGAATATGTGGTCCCTAATAAATCCATNGCACTGTTCCTATGTCGCTTC
CCAGCAGGCCTCTCACAATCAAAGTCTGGTTCAACCGGGTACTAAAGTTG
TCT
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