EY728779

Overview
NameEY728779
Unique NameEY728779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28
Identity = 71/186 (38.17%), Postives = 106/186 (56.99%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVS-DRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREE---IFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 581
            P   KT++ +AVA+    NF+ V G E   K++GE  + VR +F  AR NAP+IIF DEID +A  R     G      R++ +LL ++DG  Q  NV VI ATNR D +DPALLRPGR DR +    P+  DR +   +F+    K+  S +V++       +  +GA I+ I ++A + A+ ++
Sbjct:  177 PGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEF--PSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKS 360          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28
Identity = 77/216 (35.65%), Postives = 124/216 (57.41%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL--HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV-NIRELACLSEGCTGADISLICREAAISAIE----------ENLDASRITMQHLKTAIRHVQPS 644
            P   KTL+A+++AS+A   F ++    L SKWVG++EK V++LFA A A+ P+IIF DE+D L + R    +  ++  R+ ++ L+ LDG   ++ + V VI ATNRP ++D A+ R  RF R LYV  P    R++I    + ++  + DV  + ELA L++G +GAD+  +CR A+++ +           E      +TM   K A+R +  S
Sbjct:  292 PGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKRSANENESTL--RLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRR--RFVRRLYVPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAPLRSLTPDQMEVIETHQLPAVTMDDFKQALRVISKS 503          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.691e-28
Identity = 73/184 (39.67%), Postives = 114/184 (61.96%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLN-FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT-VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 578
            P   K+ +A+AVA+EA  + F +V   +L SKW+GESEK V++LF  AR + PSIIF DE+D L   R +       + R+ ++ LV++ G+    + T V+ ATN P  +D A+ R  RF++ +Y+  P E  R ++FR+HL   P + +D NI ELA  +EG +GADIS+I R++ +  + +
Sbjct:  169 PGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENES--EAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.691e-28
Identity = 73/184 (39.67%), Postives = 114/184 (61.96%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLN-FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT-VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 578
            P   K+ +A+AVA+EA  + F +V   +L SKW+GESEK V++LF  AR + PSIIF DE+D L   R +       + R+ ++ LV++ G+    + T V+ ATN P  +D A+ R  RF++ +Y+  P E  R ++FR+HL   P + +D NI ELA  +EG +GADIS+I R++ +  + +
Sbjct:  169 PGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENES--EAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.691e-28
Identity = 73/184 (39.67%), Postives = 114/184 (61.96%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLN-FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT-VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 578
            P   K+ +A+AVA+EA  + F +V   +L SKW+GESEK V++LF  AR + PSIIF DE+D L   R +       + R+ ++ LV++ G+    + T V+ ATN P  +D A+ R  RF++ +Y+  P E  R ++FR+HL   P + +D NI ELA  +EG +GADIS+I R++ +  + +
Sbjct:  169 PGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENES--EAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 125.176 bits (313), Expect = 4.691e-28
Identity = 81/211 (38.39%), Postives = 124/211 (58.77%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL---HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 656
            P   KTL+ARAVA+E    F ++    L SK+VG+ EK VR+LFA AR   PSIIF DE+D + + R   S+    + R+ ++ LV+ DGL    +   + V+AATNRP ++D A LR  RF + +YV  P+   RE + R  L+K     SD ++  LA L+EG +G+D++ + R+AA+  I E L+   +      T +R ++ S+ H+
Sbjct:  545 PGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLVRALFAVARELQPSIIFIDEVDSVLSER--SSNEHEATRRLKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALR--RFPKRVYVTLPDRDTRELLLRRLLQKQGSPLSDADLAHLAQLTEGYSGSDLTALARDAALEPIRE-LNVEEVKNMD-PTKLRSIRESDFHN 749          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.126e-28
Identity = 76/189 (40.21%), Postives = 107/189 (56.61%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL----DGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREE---IFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 581
            P   KT++ +AVA+     F+ V G E   K++GE  + VR +F  AR NAPSIIF DE+D +A    K  D  + SDR + ++L+EL    DG  Q  NV VI ATNR D +DPALLRPGR DR +    P   DR E   IF     K+  + + ++  L   ++  +GA I+ I +EA + A+ +N
Sbjct:  215 PGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT---KRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEF--PYLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 398          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.001e-28
Identity = 68/182 (37.36%), Postives = 105/182 (57.69%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 581
            P   KTL+A+AV+ EA + FL   G       VG     +R LF  A+ N+P ++F DEID +   R   S     +++ ++QLL E+DG   +  + V+ ATN+ + +D ALLRPGRFD  ++V PP    R  +  ++L+K+   S+++I +LA  + G TGADI  +  +AAI+A   N
Sbjct:  208 PGVGKTLLAKAVSGEAQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSVGGNR-TFSPHHPFANQTINQLLAEMDGFQSKEGIIVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLKKVKTGSNIDIEKLAHGTVGYTGADIQNLVNQAAIAAALRN 388          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.328e-27
Identity = 82/212 (38.68%), Postives = 124/212 (58.49%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN---VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK--IPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 656
            P   KTL+ARAVA+E    FL +    L SK+VG+ EK VR+LFA AR   PSIIF DE+D L + R   S+    S R+ ++ LVE DGL    +   + V+AATNRP ++D A LR  RF + +YV  P+   RE +    L+K   P  SD  +  LA ++EG +G+D++ + ++AA+  I E L+  ++    + +A+R +   + H+
Sbjct:  549 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER--SSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDVQTRELLLNRLLQKQGSPLDSDA-LGRLAKITEGYSGSDLTALAKDAALEPIRE-LNVEQVKCLDI-SAMRQITEKDFHN 753          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_DROSI (Spastin OS=Drosophila simulans GN=spas PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.040e-27
Identity = 82/211 (38.86%), Postives = 122/211 (57.82%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN---VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN-IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 656
            P   KTL+ARAVA+E    FL +    L SK+VG+ EK VR+LFA AR   PSIIF DE+D L + R   S     S R+ ++ LVE DGL    +   + V+AATNRP ++D A LR  RF + +YV  P+E  RE +    L+K     D   +R LA +++G +G+D++   ++AA+  I E L+  ++    + +A+R +   + HS
Sbjct:  525 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER--SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTARPKDAALEPIRE-LNVEQVKCLDI-SAMRAITEQDFHS 729          
The following BLAST results are available for this feature:
BLAST of EY728779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
PRS6B_SCHPO3.591e-2838.1726S protease regulatory subunit 6B homolog OS=Schi... [more]
FIGL1_DROME3.591e-2835.65Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
VPS4A_RAT4.691e-2839.67Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_MOUSE4.691e-2839.67Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN4.691e-2839.67Vacuolar protein sorting-associated protein 4A OS=... [more]
SPAST_ANOGA4.691e-2838.39Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]
PRS6B_YEAST6.126e-2840.2126S protease regulatory subunit 6B homolog OS=Sacc... [more]
YME1_SCHMA8.001e-2837.36Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
SPAST_DROGR2.328e-2738.68Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
SPAST_DROSI3.040e-2738.86Spastin OS=Drosophila simulans GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-E03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728779 ID=EY728779; Name=EY728779; organism=Citrus sinensis; type=EST; length=853bp
CCACGCGTCCGCTGGGATTTTGATGTTTGGTCCTCCCGNGTTGTAGCAAA
ACCCTCATGGCACGTGCAGTAGCTTCAGAAGCAGGGCTGAACTTCCTTGC
AGTGAAGGGTCCAGAGCTTTTTAGCAAATGGGTTGGTGAATCCGAGAAAG
CAGTGCGATCGCTGTTTGCAAAGGCTAGGGCCAATGCTCCATCAATCATA
TTTTTTGATGAAATTGATGGTCTTGCTGCCATTCGTGGGAAGGAAAGTGA
TGGGGTTTCTGTTTCTGATCGGGTTATGAGTCAACTTCTTGTTGAATTGG
ATGGCCTGCATCAAAGAGTTAATGTTACTGTTATTGCTGCTACAAATCGA
CCAGACAAGATTGATCCTGCCCTGTTGCGACCAGGACGCTTTGACAGGCT
TCTGTATGTGGGACCTCCAAATGAGACTGACCGAGAAGAAATATTCCGAA
TTCATTTGCGTAAAATTCCTTGCAGCTCTGATGTAAACATAAGAGAACTG
GCTTGCCTCTCAGAAGGCTGTACTGGGGCTGATATATCATTAATCTGCCG
AGAGGCAGCCATTTCAGCCATTGAGGAGAACCTCGATGCATCAAGAATAA
CAATGCAACACTTGAAGACTGCAATTAGACACGTACAACCATCGGAGATT
CATTCTTANCAGGAGCTCTCAGCTAAGTCCAAAGGCTTGTACACTCTAAT
GCGGAGGCTGATGAATCANGATATCACCTGCGCCCGAATAAATCATCGGA
TTGAATATGTGGTCCCTAATAAATCCATNGCACTGTTCCTATGTCGCTTC
CCAGCAGGCCTCTCACAATCAAAGTCTGGTTCAACCGGGTACTAAAGTTG
TCT
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