EY728685

Overview
NameEY728685
Unique NameEY728685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: PF21A_HUMAN (PHD finger protein 21A OS=Homo sapiens GN=PHF21A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.919e-11
Identity = 29/50 (58.00%), Postives = 33/50 (66.00%), Query Frame = 2 
Query:  359 DGYYYE--CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKC 502
            DG  +E  C +C   G LL CD+C R YHL CLDPPLK IP G W CP+C
Sbjct:  483 DGDIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 532
[Close]
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: PF21A_MOUSE (PHD finger protein 21A OS=Mus musculus GN=Phf21a PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 28/50 (56.00%), Postives = 33/50 (66.00%), Query Frame = 2 
Query:  359 DGYYYE--CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKC 502
            DG  +E  C +C   G LL CD+C R YHL CL+PPLK IP G W CP+C
Sbjct:  463 DGDIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLEPPLKTIPKGMWICPRC 512
The following BLAST results are available for this feature:
BLAST of EY728685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PF21A_HUMAN1.919e-1158.00PHD finger protein 21A OS=Homo sapiens GN=PHF21A P... [more]
PF21A_MOUSE5.585e-1156.00PHD finger protein 21A OS=Mus musculus GN=Phf21a P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-C01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728685 ID=EY728685; Name=EY728685; organism=Citrus sinensis; type=EST; length=886bp
CACGCGTCCGGGAAGATTGGAATTGCTTCTTCAGAAATTTCAGAGTTGAG
ATTGCTATCAAGCTCTGATATCTCTGCTTCTTCATTGACTCGTGACATGG
GCTTACTGCCACTGGTAGTGACAATGTAAGACTCAGCACTGAAAGATGAA
GGATAACAGTTCATCAACTAGTACAATGATTAATAGAAACTGGGTCTTGA
AGCGAAAAAGAAGAAAGTTGCCTTGTGGACCTGGTCTATCCAATGGTAAA
GAAGAGAACTTAGTGACCTCAGAATCTCCAAGGAATACACCTTCAGCTAA
ACGCAGGCTAAAGAATGAAATAAATGCTGATCGATCTTCAACCAAGAAGA
AAGGAAATGATGGGTATTACTATGAATGTGTGATCTGTGATCTTGGCGGT
AACCTGTTATGTTGCGATAGCTGTCCCAGAACCTATCATCTTCAGTGCCT
TGATCCACCTCTTAAGCGAATTCCGAATGGAAGATGGCAATGCCCGAAGT
GCACACAGAAAAATGACCAGCTCAAGCGCATCAGCGATCTGGATTCATCT
CAAAGCGAGCAAGATCAAAAATATCACCATAAAATCTCCAAGTGGGGTGA
AGTCATCTGGTGCTGATAAAGTATCCCAAATCCTTCGGAAACTCCATTCT
TGCCAGACAGAGGTCCAATAACGGAANATCTGTTTTGGGTCTCCGGAGTG
AAACCCGTTGACAAGAGTTTGGATTCCTCTCAAGTAGATGTATCTTGTAG
CCCCCAGGGTGAGCAATGCGTCGGCTGGTGTTCTTGGTGAAGGGTAGTTC
ACTTGGTCCGGATGATCATAACGAAAACCAGTGAGAGTGTCTGTCCGCGA
AGTCCAGTTGGGAAGACCAAGAGTGTCTGCCTGGGG
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