EY728641

Overview
NameEY728641
Unique NameEY728641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_CHICK (5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 4.290e-54
Identity = 103/207 (49.76%), Postives = 138/207 (66.67%), Query Frame = 2
Query:   38 GYNRPTVL---SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHV 649
            G+   TV+   ++ PGEGEHKIM Y+R QR  P +DPNT HCL G DADLIML LATHE HF+I+RE  F P +   C LC Q GH   +C+G  + K G+ D+  D +   ++ + F+ +  LREYL+ E  + + PF  D E  VDD++FMCFFVGNDFLPH+P+LEIREGAI+ L+ +YK      GGYLT+    +L+RV+ +
Sbjct:  187 GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPHFTIIREE-FKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPASEQEFIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGFVNLQRVQMI 392          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_MOUSE (5'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.248e-53
Identity = 107/212 (50.47%), Postives = 140/212 (66.04%), Query Frame = 2
Query:   20 NYPSFKGYNRPTVLSNV--PGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHV 649
            N P +K  N   +LS+   PGEGEHKIM Y+R QR  P +DPNT HCL G DADLIML LATHE +F+I+RE  F P +   C LC Q GH   +CEG  + K G+ DE  D +   +  + FL +  LREYL+ E  + + PF  D+E  +DD++FMCFFVGNDFLPH+P+LEIREGAI+ L+ +YK      GGYLT+    +L+RV+ +
Sbjct:  184 NDPGWK--NLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREE-FKPNKPKPCALCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEFIFLRLNVLREYLERELTMASLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMI 392          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_CAEBR (5'-3' exoribonuclease 2 homolog OS=Caenorhabditis briggsae GN=xrn-2 PE=3 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 4.743e-53
Identity = 108/201 (53.73%), Postives = 134/201 (66.67%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPK---KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFR 655
            +NVPGEGEHKIM Y+R QR  P +DPNT HCL G DADLIML +ATHE +F+I+RE  F P Q   C LCGQ GH    C G     A    + GDE   P+   K + FL I  LREYL+ E  +PN PF+ +LE  +DD++F+CFFVGNDFLPH+P+LEIREGAI+ L+ +YK+    + GYLT    P L RVE + R
Sbjct:  201 ANVPGEGEHKIMDYIRKQRGNPAHDPNTVHCLCGADADLIMLGIATHEANFNIIREE-FVPNQPRACELCGQYGHELKECRG-----AENDTDLGDEYCKPEQREKNFIFLRIPVLREYLEKEMAMPNLPFQFNLERALDDWVFLCFFVGNDFLPHLPSLEIREGAIDRLIKLYKEMVYEMKGYLTKDGIPELDRVEMIMR 395          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_HUMAN (5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 8.090e-53
Identity = 106/212 (50.00%), Postives = 139/212 (65.57%), Query Frame = 2
Query:   20 NYPSFKGYNRPTVLSNV--PGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHV 649
            N P +K  N   +LS+   PGEGEHKIM Y+R QR  P +DPNT HCL G DADLIML LATHE +F+I+RE  F P +   C LC Q GH   +CEG  + K G+ DE  D +   +  + FL +  LREYL+ E  + + PF  D+E  +DD++FMCFFVGNDFLPH+P+LEIRE AI+ L+ +YK      GGYLT+    +L+RV+ +
Sbjct:  184 NDPGWK--NLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREE-FKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMI 392          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_CAEEL (5'-3' exoribonuclease 2 homolog OS=Caenorhabditis elegans GN=xrn-2 PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.380e-52
Identity = 107/201 (53.23%), Postives = 134/201 (66.67%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPK---KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFR 655
            +NVPGEGEHKIM YVR QR  P +DPNT HCL G DADLIML +ATHE +F+I+RE  F P Q   C LCGQ GH    C G     A    + GD+   P+   K + FL I  LREYL+ E  +PN PF+ D+E  +DD++F+CFFVGNDFLPH+P+LEIREGAI+ L+ +YK+    + GYLT    P L RVE + +
Sbjct:  199 ANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIMLGIATHEANFNIIREE-FVPNQPRACDLCGQYGHELKECRG-----AENETDLGDDYCKPEQREKNFIFLRIPVLREYLEKELSMPNLPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEIREGAIDRLIKLYKEMVYQMKGYLTKDGIPELDRVEMIMK 393          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_PONAB (5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.945e-52
Identity = 105/212 (49.53%), Postives = 138/212 (65.09%), Query Frame = 2
Query:   20 NYPSFKGYNRPTVLSNV--PGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHV 649
            N P +K  N   +LS+   PGEGEHKIM Y+R QR  P +DPNT HCL G DADLIML LATHE +F+I+RE  F P +   C LC Q GH   +CEG  + K  + DE  D +   +  + FL +  LREYL+ E  + + PF  D+E  +DD++FMCFFVGNDFLPH+P+LEIRE AI+ L+ +YK      GGYLT+    +L+RV+ +
Sbjct:  184 NDPGWK--NLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREE-FKPNKPKPCGLCNQFGHEVKDCEGLLREKKVKHDELADSLPCAEGEFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMI 392          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_CRYNE (5'-3' exoribonuclease 2 OS=Cryptococcus neoformans GN=RAT1 PE=3 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 1.168e-51
Identity = 105/198 (53.03%), Postives = 135/198 (68.18%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDK--CFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPK--KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVE 643
            S+VPGEGEHKIM ++R QR+ P +D NT H +YGLDADLIML+LATHE HF +LRE VF    +    C  CG+ GH+AANC+   K K    D    EV   +  KP+ FL +  LREYL  E  +P  PF  DLE  +DD+IFM FFVGNDFLPH+P+LEIREGAI++L+ +++ E   +GGYLT+  K +L R +
Sbjct:  204 SSVPGEGEHKIMDWIRRQRSYPTWDANTSHVIYGLDADLIMLSLATHEPHFRVLREDVFAQSSKGPHACKNCGKVGHIAANCKSDKKFK----DPNVAEVAKTEDPKPFIFLDVACLREYLAVELVVPGMPFPFDLELAIDDWIFMIFFVGNDFLPHLPSLEIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQ 397          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_DROME (5'-3' exoribonuclease 2 homolog OS=Drosophila melanogaster GN=Rat1 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 3.517e-48
Identity = 108/244 (44.26%), Postives = 143/244 (58.61%), Query Frame = 2
Query:   20 NYPSFKGYNRPTVLSNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFRLGDLMRIEYPEKSTSHRRLLKHPA*NAQRKEE 751
            N P++KG       +NVPGEGEHKIM Y+R QR  P +DPNT+H L G DADLIML LATHE +F+I+RE  F P +   C +C   GH    C G         + K D  +  +  + F+ +  LREYL     +PN PFE   E  +DD++FMCFFVGNDFLPH+P+LEIREGA++ L+ +YKK      GYLTD    +L RV+ +  + DL   E     +  RR  +  A +  RK +
Sbjct:  186 NNPAWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREE-FLPNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAEVKFIFVRLSVLREYLKQTLEMPNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVELYKKCVYKTRGYLTDSGDVNLDRVQLI--MTDLGNAEDQIFKSRQRREEQFKARDKARKRQ 426          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_CANAL (5'-3' exoribonuclease 2 OS=Candida albicans GN=RAT1 PE=3 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 8.965e-44
Identity = 100/231 (43.29%), Postives = 135/231 (58.44%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVV-VPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFRLGDLMRIEYPEKSTSHRRLLKHPA*NAQRKEE 751
            + VPGEGEHK+MS++R QR+ P YDPNT+HC+YGLDADLI L LATHE HF +LRE VF    QDK F                K +  + +  GD V    KKP+ +LH+  LREYL  E   P   F  +LE  +DD++F+CFF GNDFLPH+P+L++R+  I+ L+  +K+    L  Y+T   K +L+ VE +     +  + Y E         KH A   QR+EE
Sbjct:  194 ATVPGEGEHKLMSFIRSQRSDPQYDPNTKHCIYGLDADLIFLGLATHEPHFRVLREDVF--ASQDKKF--------------TIKDQIADANSNGDTVAKEDKKPFLWLHVNVLREYLQVELFTPRMSFPFELERAIDDWVFLCFFAGNDFLPHLPSLDVRDNGIDTLVQCWKRSLPILKDYVTCDGKLNLKSVEVL-----MSNLAYKESEIFKN---KHAA--EQRREE 398          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_SCHPO (5'-3' exoribonuclease 2 OS=Schizosaccharomyces pombe GN=dhp1 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.997e-43
Identity = 94/195 (48.21%), Postives = 122/195 (62.56%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP-KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVE 643
            ++VPGEGEHKIM ++R QR  P YDPNT H +YGLDADLIML LATHE HF +LRE VF            Q G      E +   K    D+  +   VP KKP+ +L++  LREYL+ E  +PN PF  DLE  +DD++F  FFVGNDFLPH+P+L+IR+GA+  L  +++     +GGYLT     +L R E
Sbjct:  200 ASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVFF-----------QQGSTKKTKEERLGIK--RLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGAVERLTEIWRASLPHMGGYLTLDGSVNLARAE 381          
The following BLAST results are available for this feature:
BLAST of EY728641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
XRN2_CHICK4.290e-5449.765'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 P... [more]
XRN2_MOUSE1.248e-5350.475'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE... [more]
XRN2_CAEBR4.743e-5353.735'-3' exoribonuclease 2 homolog OS=Caenorhabditis ... [more]
XRN2_HUMAN8.090e-5350.005'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE... [more]
XRN2_CAEEL1.380e-5253.235'-3' exoribonuclease 2 homolog OS=Caenorhabditis ... [more]
XRN2_PONAB8.945e-5249.535'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE... [more]
XRN2_CRYNE1.168e-5153.035'-3' exoribonuclease 2 OS=Cryptococcus neoformans... [more]
XRN2_DROME3.517e-4844.265'-3' exoribonuclease 2 homolog OS=Drosophila mela... [more]
XRN2_CANAL8.965e-4443.295'-3' exoribonuclease 2 OS=Candida albicans GN=RAT... [more]
XRN2_SCHPO1.997e-4348.215'-3' exoribonuclease 2 OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-E11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728641 ID=EY728641; Name=EY728641; organism=Citrus sinensis; type=EST; length=913bp
CACGCGTCCGCACTGAAAGAATTATCCAAGCTTTAAGGGGTATAACCGTC
CCACCGTCCTCTCAAATGTTCCTGGTGAAGGGGAACACAAGATTATGTCA
TACGTTCGCCTTCAAAGAAATCTTCCTGGTTATGATCCAAATACTCGCCA
TTGCTTGTATGGTTTGGATGCGGATCTGATTATGTTGGCTTTGGCAACGC
ATGAAGTTCATTTTTCAATCCTTCGAGAGGTTGTATTTACTCCTGGACAG
CAAGACAAATGCTTTCTTTGTGGTCAGCCTGGTCATCTGGCTGCCAATTG
TGAAGGAAAGGCGAAGAGAAAGGCAGGAGAATTTGATGAAAAAGGGGATG
AGGTCGTTGTGCCTAAAAAGCCCTATCAGTTTCTCCACATATGGACCCTT
AGAGAATATCTGGACTACGAGTTCAGAATTCCTAATCCTCCATTTGAGAT
CGACTTAGAATGCATTGTGGATGATTTTATCTTTATGTGTTTCTTTGTTG
GCAATGACTTTTTGCCGCATATGCCAACATTGGAGATTCGTGAGGGTGCA
ATCAACTTGTTGATGGCAGTTTACAAGAAGGAATGTANGGCTTTGGGCGG
GTACTTGACTGATGGAAGCAAGCCAAGTCTGCGCCGGGTGGAGCATGTAT
TCAGGCTGGGGGATCTTATGAGGATAGAATATCCAGAGAAGAGCACGAGT
CATCGGAGACTGCTGAAACATCCAGCGTGAAACGCCCAGCGAAAAGAGGA
GATATGTGGAGCGCTACCCAACCGGATTCCTTAGGCTGGTCCCCGAGTCG
TGGTTCTCGGCTGGTTGAGCCCTGCGCCTTCACCTATCACGGAGTGCTGT
GTGGGGGGTGAGAAAGGGTGAGGAGTTCCTGGCGGCCCAAAATGCCCAGT
CGTTGCTGGGGCT
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