EY728641

Overview
NameEY728641
Unique NameEY728641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_CANGA (5'-3' exoribonuclease 2 OS=Candida glabrata GN=RAT1 PE=3 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 3.407e-43
Identity = 100/232 (43.10%), Postives = 134/232 (57.76%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP--KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFRLGDLMRIEYPEKSTSHRRLLKHPA*NAQRKEE 751
            + VPGEGEHKIM+++R QR  P Y+PNT HC+YGLDADLI L LATHE HF ILRE VF    + +                  K      DE+ D +     +KP+ +LHI  LREYL  E   P  PF  DLE  +DD++FMCFF GNDFLPH+P L++RE +I++L+ ++K     L  Y+T   K +L  VE V  L +L   E     T H + ++    N +RK++
Sbjct:  198 ATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFAQDNRKR---------------NNVKDTIDMTDEEKDLIRKQDSEKPFLWLHISVLREYLSAELWTPKLPFPFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKSILPRLKTYMTCDGKLNLESVEMV--LKELGNREGDIFKTRHIQEIRKKEANERRKQQ 412          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_DEBHA (5'-3' exoribonuclease 2 OS=Debaryomyces hansenii GN=RAT1 PE=3 SV=4)

HSP 1 Score: 173.326 bits (438), Expect = 1.691e-42
Identity = 93/216 (43.06%), Postives = 129/216 (59.72%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFRLGDLMRIEYPEKSTSHRR 709
            + VPGEGEHK+MS++R QR+ P YDPNT+HC+YGLDADLI L LATHE HF +LRE VF   Q  +  +  Q        +  A++ A             KKP+ +LH+  LREYL+ E   P+  F  DLE  +DD++FMCFFVGNDFLPH+P+L++R+  I++L+  +K+    L  Y+T     +L  VE +     L  + Y E     +R
Sbjct:  195 ATVPGEGEHKLMSFIRSQRSDPEYDPNTKHCIYGLDADLIFLGLATHEPHFRVLREDVFA-NQSRQMRISDQLSMTQDQKDSIAEQDA-------------KKPFLWLHVNVLREYLEIELYNPHLSFPFDLERAIDDWVFMCFFVGNDFLPHLPSLDVRDNGIDILVNCWKRMLPKLRDYITCDGNLNLESVEKL-----LSSLSYKEDEIFRKR 391          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_ASHGO (5'-3' exoribonuclease 2 OS=Ashbya gossypii GN=RAT1 PE=3 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 1.691e-42
Identity = 96/230 (41.74%), Postives = 137/230 (59.57%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVF-----RLGDLMRIEYPE-----KSTSHRRLLKH 721
            + VPGEGEHKIM+++R QR    Y+PNT HC+YGLDADLI L LATHE HF ILRE VF    + +        H   +   + K+   E D +        KP+ +LH+  LREYL  E  +P   F  DLE  +DD++FMCFF GNDFLPH+P+L++RE +I++L+ ++K    +L  YLT   K +L+ VE V      R  D+ + +Y +     ++   R++LK+
Sbjct:  198 ATVPGEGEHKIMNFIRSQRADVQYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFAQDNRRR-----PRQHDMMDMSAEEKQALIEQDAE--------KPFLWLHVSVLREYLSAELLVPRLAFHFDLERAIDDWVFMCFFCGNDFLPHLPSLDVRENSIDILVDIWKAVLPSLKTYLTCDGKLNLKGVEKVLAQLGNRESDIFKKKYEQELRKKEAQERRKMLKN 414          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_YEAST (5'-3' exoribonuclease 2 OS=Saccharomyces cerevisiae GN=RAT1 PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 5.439e-41
Identity = 92/216 (42.59%), Postives = 131/216 (60.65%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVF-----RLGDLMRIEYPEKS 694
            + VPGEGEHKIM+++R QR  P Y+PNT HC+YGLDADLI L LATHE HF ILRE VF    + +        +L        + K  +F +K +     ++P+ +LHI  LREYL  E  +P  PF  DLE  +DD++FMCFF GNDFLPH+P L++RE +I++L+ ++K     L  Y+T     +L  VE +      R GD+ +  + +++
Sbjct:  198 ATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFAQDNRKR-------NNLKDTINMTEEEK--QFLQKQNS----EQPFLWLHINVLREYLSAELWVPGLPFTFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKVVLPKLKTYMTCDGVLNLPSVETLLQHLGSREGDIFKTRHIQEA 400          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_KLULA (5'-3' exoribonuclease 2 OS=Kluyveromyces lactis GN=RAT1 PE=3 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 2.067e-40
Identity = 92/202 (45.54%), Postives = 124/202 (61.39%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVF-RLGD 664
            + VPGEGEHKIM+++R QR    Y+PNT HC+YGLDADLI L LATHE HF ILRE VF      K     +P  +  N   + K++  + D +        KP+ +LHI  LREYL  E  IP+  F+ D E  +DD++FMCFF GNDFLPH+P L++RE +I++L+ ++K        YLT     +L  VE +  +LGD
Sbjct:  198 ATVPGEGEHKIMNFIRSQRADTQYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFANNNYKK----PKPQDMI-NLSEEEKQQLIQQDSE--------KPFLWLHISVLREYLSAELAIPHLSFQFDFERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILVDIWKTVLPKTKTYLTCDGTLNLEPVEALLEQLGD 386          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN1_SCHPO (5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe GN=exo2 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.527e-38
Identity = 90/210 (42.86%), Postives = 123/210 (58.57%), Query Frame = 2
Query:   71 PGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILR-EVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNP--PFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFRLGDLMRIEYPEK 691
            PGEGEHKIM Y+R Q+  P Y+PNTRHCLYGLDADLIML L +H+ HF +LR EV F P  ++                 ++K  A              + +  LH+  LREYL++EF+       F+ DLE I+DDFI + FFVGNDFLPH+P L I EGA+ L+ ++YKK   + GGY+ +    ++ R+E +     L+ +E  EK
Sbjct:  173 PGEGEHKIMEYIRTQKAQPSYNPNTRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGPASRN-----------------RSKELA-------------HQKFYLLHLSLLREYLEFEFQECRSTFTFKYDLEKILDDFILLAFFVGNDFLPHLPGLHINEGALALMFSIYKKVMPSAGGYINEKGVINMARLELI-----LLELENFEK 347          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN1_HUMAN (5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.088e-36
Identity = 86/210 (40.95%), Postives = 115/210 (54.76%), Query Frame = 2
Query:   71 PGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK-PYQFLHIWTLREYLDYEFRI--PNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVE-HVFRLGDLMRIEYPE 688
            PGEGEHKIM ++R ++  P +DPNTRHCLYGLDADLIML L +HE HFS+LRE V   G                              +K   V  P++  +  LH+  +REY+DYEF +      F+ D+E I+DD+I M F VGNDF+PH+P L I   A+ LL   Y      LGGY+ +    +L R E ++ +L D  R  + E
Sbjct:  174 PGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGG------------------------------KKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSE 353          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN1_MOUSE (5'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.174e-35
Identity = 86/210 (40.95%), Postives = 114/210 (54.29%), Query Frame = 2
Query:   71 PGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK-PYQFLHIWTLREYLDYEFRI--PNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVE-HVFRLGDLMRIEYPE 688
            PGEGEHKIM ++R ++  P +DPNTRHCLYGLDADLIML L +HE HFS+LRE V   G                              +K   V  P++  +  LH+  +REY+DYEF        F+ D+E I+DD+I M F VGNDF+PH+P L I   A+ LL   Y      LGGY+ +    +L R E ++ +L D  R  + E
Sbjct:  174 PGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGG------------------------------KKTQRVCAPEETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFSE 353          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_YARLI (5'-3' exoribonuclease 2 OS=Yarrowia lipolytica GN=RAT1 PE=3 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 9.935e-35
Identity = 89/222 (40.09%), Postives = 124/222 (55.86%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEI--DLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFRLGDLMRIEYPEKSTSHRRLLKH 721
            + VPGEGEHKIM ++R QR  P Y+ NT HC+YGLDADLI L LATHE  F +LRE VF   +Q+K       GH                          KKP+ +L+I  LREYL  + R  +P  +I  DLE  +DD++F+CFFVGNDFLPH+P  ++R+G+IN+L+  +K        Y+T     +L + +      DL++      +T  +R+L H
Sbjct:  215 ATVPGEGEHKIMEFIRSQRGDPTYNANTSHCIYGLDADLIFLGLATHEPKFKLLREDVF---RQNK-----TAGH-------------------------QKKPFIWLNIDILREYLREDLRFTHPQTKIPFDLERAIDDWVFLCFFVGNDFLPHLPACDVRDGSINVLVNQWKNGMTRWKDYITCDGHVNLAQAQ------DLLK----NFATQEQRILVH 393          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN1_YEAST (5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae GN=KEM1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.642e-30
Identity = 74/193 (38.34%), Postives = 112/193 (58.03%), Query Frame = 2
Query:   68 VPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFR--IPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRV 640
            VPGEGEHKIM+++R  ++   ++ NTRHC+YGLDADLIML L+TH  HF++LRE V T G++              N E K+               +  + +  LH+  LREY++ EF+       FE + E I+DDFI + F +GNDFLP++P L + +GA  +L+  +K+      GY+ +  K +L+R+
Sbjct:  173 VPGEGEHKIMNFIRHLKSQKDFNQNTRHCIYGLDADLIMLGLSTHGPHFALLREEV-TFGRR--------------NSEKKS---------------LEHQNFYLLHLSLLREYMELEFKEIADEMQFEYNFERILDDFILVMFVIGNDFLPNLPDLHLNKGAFPVLLQTFKEALLHTDGYINEHGKINLKRL 335          
The following BLAST results are available for this feature:
BLAST of EY728641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
XRN2_CANGA3.407e-4343.105'-3' exoribonuclease 2 OS=Candida glabrata GN=RAT... [more]
XRN2_DEBHA1.691e-4243.065'-3' exoribonuclease 2 OS=Debaryomyces hansenii G... [more]
XRN2_ASHGO1.691e-4241.745'-3' exoribonuclease 2 OS=Ashbya gossypii GN=RAT1... [more]
XRN2_YEAST5.439e-4142.595'-3' exoribonuclease 2 OS=Saccharomyces cerevisia... [more]
XRN2_KLULA2.067e-4045.545'-3' exoribonuclease 2 OS=Kluyveromyces lactis GN... [more]
XRN1_SCHPO2.527e-3842.865'-3' exoribonuclease 1 OS=Schizosaccharomyces pom... [more]
XRN1_HUMAN3.088e-3640.955'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE... [more]
XRN1_MOUSE1.174e-3540.955'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE... [more]
XRN2_YARLI9.935e-3540.095'-3' exoribonuclease 2 OS=Yarrowia lipolytica GN=... [more]
XRN1_YEAST5.642e-3038.345'-3' exoribonuclease 1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-E11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728641 ID=EY728641; Name=EY728641; organism=Citrus sinensis; type=EST; length=913bp
CACGCGTCCGCACTGAAAGAATTATCCAAGCTTTAAGGGGTATAACCGTC
CCACCGTCCTCTCAAATGTTCCTGGTGAAGGGGAACACAAGATTATGTCA
TACGTTCGCCTTCAAAGAAATCTTCCTGGTTATGATCCAAATACTCGCCA
TTGCTTGTATGGTTTGGATGCGGATCTGATTATGTTGGCTTTGGCAACGC
ATGAAGTTCATTTTTCAATCCTTCGAGAGGTTGTATTTACTCCTGGACAG
CAAGACAAATGCTTTCTTTGTGGTCAGCCTGGTCATCTGGCTGCCAATTG
TGAAGGAAAGGCGAAGAGAAAGGCAGGAGAATTTGATGAAAAAGGGGATG
AGGTCGTTGTGCCTAAAAAGCCCTATCAGTTTCTCCACATATGGACCCTT
AGAGAATATCTGGACTACGAGTTCAGAATTCCTAATCCTCCATTTGAGAT
CGACTTAGAATGCATTGTGGATGATTTTATCTTTATGTGTTTCTTTGTTG
GCAATGACTTTTTGCCGCATATGCCAACATTGGAGATTCGTGAGGGTGCA
ATCAACTTGTTGATGGCAGTTTACAAGAAGGAATGTANGGCTTTGGGCGG
GTACTTGACTGATGGAAGCAAGCCAAGTCTGCGCCGGGTGGAGCATGTAT
TCAGGCTGGGGGATCTTATGAGGATAGAATATCCAGAGAAGAGCACGAGT
CATCGGAGACTGCTGAAACATCCAGCGTGAAACGCCCAGCGAAAAGAGGA
GATATGTGGAGCGCTACCCAACCGGATTCCTTAGGCTGGTCCCCGAGTCG
TGGTTCTCGGCTGGTTGAGCCCTGCGCCTTCACCTATCACGGAGTGCTGT
GTGGGGGGTGAGAAAGGGTGAGGAGTTCCTGGCGGCCCAAAATGCCCAGT
CGTTGCTGGGGCT
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