EY728641
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_CANGA (5'-3' exoribonuclease 2 OS=Candida glabrata GN=RAT1 PE=3 SV=3) HSP 1 Score: 175.637 bits (444), Expect = 3.407e-43 Identity = 100/232 (43.10%), Postives = 134/232 (57.76%), Query Frame = 2 Query: 62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP--KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFRLGDLMRIEYPEKSTSHRRLLKHPA*NAQRKEE 751 + VPGEGEHKIM+++R QR P Y+PNT HC+YGLDADLI L LATHE HF ILRE VF + + K DE+ D + +KP+ +LHI LREYL E P PF DLE +DD++FMCFF GNDFLPH+P L++RE +I++L+ ++K L Y+T K +L VE V L +L E T H + ++ N +RK++ Sbjct: 198 ATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFAQDNRKR---------------NNVKDTIDMTDEEKDLIRKQDSEKPFLWLHISVLREYLSAELWTPKLPFPFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKSILPRLKTYMTCDGKLNLESVEMV--LKELGNREGDIFKTRHIQEIRKKEANERRKQQ 412
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_DEBHA (5'-3' exoribonuclease 2 OS=Debaryomyces hansenii GN=RAT1 PE=3 SV=4) HSP 1 Score: 173.326 bits (438), Expect = 1.691e-42 Identity = 93/216 (43.06%), Postives = 129/216 (59.72%), Query Frame = 2 Query: 62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFRLGDLMRIEYPEKSTSHRR 709 + VPGEGEHK+MS++R QR+ P YDPNT+HC+YGLDADLI L LATHE HF +LRE VF Q + + Q + A++ A KKP+ +LH+ LREYL+ E P+ F DLE +DD++FMCFFVGNDFLPH+P+L++R+ I++L+ +K+ L Y+T +L VE + L + Y E +R Sbjct: 195 ATVPGEGEHKLMSFIRSQRSDPEYDPNTKHCIYGLDADLIFLGLATHEPHFRVLREDVFA-NQSRQMRISDQLSMTQDQKDSIAEQDA-------------KKPFLWLHVNVLREYLEIELYNPHLSFPFDLERAIDDWVFMCFFVGNDFLPHLPSLDVRDNGIDILVNCWKRMLPKLRDYITCDGNLNLESVEKL-----LSSLSYKEDEIFRKR 391
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_ASHGO (5'-3' exoribonuclease 2 OS=Ashbya gossypii GN=RAT1 PE=3 SV=3) HSP 1 Score: 173.326 bits (438), Expect = 1.691e-42 Identity = 96/230 (41.74%), Postives = 137/230 (59.57%), Query Frame = 2 Query: 62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVF-----RLGDLMRIEYPE-----KSTSHRRLLKH 721 + VPGEGEHKIM+++R QR Y+PNT HC+YGLDADLI L LATHE HF ILRE VF + + H + + K+ E D + KP+ +LH+ LREYL E +P F DLE +DD++FMCFF GNDFLPH+P+L++RE +I++L+ ++K +L YLT K +L+ VE V R D+ + +Y + ++ R++LK+ Sbjct: 198 ATVPGEGEHKIMNFIRSQRADVQYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFAQDNRRR-----PRQHDMMDMSAEEKQALIEQDAE--------KPFLWLHVSVLREYLSAELLVPRLAFHFDLERAIDDWVFMCFFCGNDFLPHLPSLDVRENSIDILVDIWKAVLPSLKTYLTCDGKLNLKGVEKVLAQLGNRESDIFKKKYEQELRKKEAQERRKMLKN 414
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_YEAST (5'-3' exoribonuclease 2 OS=Saccharomyces cerevisiae GN=RAT1 PE=1 SV=3) HSP 1 Score: 168.318 bits (425), Expect = 5.439e-41 Identity = 92/216 (42.59%), Postives = 131/216 (60.65%), Query Frame = 2 Query: 62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVF-----RLGDLMRIEYPEKS 694 + VPGEGEHKIM+++R QR P Y+PNT HC+YGLDADLI L LATHE HF ILRE VF + + +L + K +F +K + ++P+ +LHI LREYL E +P PF DLE +DD++FMCFF GNDFLPH+P L++RE +I++L+ ++K L Y+T +L VE + R GD+ + + +++ Sbjct: 198 ATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFAQDNRKR-------NNLKDTINMTEEEK--QFLQKQNS----EQPFLWLHINVLREYLSAELWVPGLPFTFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKVVLPKLKTYMTCDGVLNLPSVETLLQHLGSREGDIFKTRHIQEA 400
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_KLULA (5'-3' exoribonuclease 2 OS=Kluyveromyces lactis GN=RAT1 PE=3 SV=3) HSP 1 Score: 166.392 bits (420), Expect = 2.067e-40 Identity = 92/202 (45.54%), Postives = 124/202 (61.39%), Query Frame = 2 Query: 62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVF-RLGD 664 + VPGEGEHKIM+++R QR Y+PNT HC+YGLDADLI L LATHE HF ILRE VF K +P + N + K++ + D + KP+ +LHI LREYL E IP+ F+ D E +DD++FMCFF GNDFLPH+P L++RE +I++L+ ++K YLT +L VE + +LGD Sbjct: 198 ATVPGEGEHKIMNFIRSQRADTQYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFANNNYKK----PKPQDMI-NLSEEEKQQLIQQDSE--------KPFLWLHISVLREYLSAELAIPHLSFQFDFERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILVDIWKTVLPKTKTYLTCDGTLNLEPVEALLEQLGD 386
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN1_SCHPO (5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe GN=exo2 PE=1 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.527e-38 Identity = 90/210 (42.86%), Postives = 123/210 (58.57%), Query Frame = 2 Query: 71 PGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILR-EVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNP--PFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFRLGDLMRIEYPEK 691 PGEGEHKIM Y+R Q+ P Y+PNTRHCLYGLDADLIML L +H+ HF +LR EV F P ++ ++K A + + LH+ LREYL++EF+ F+ DLE I+DDFI + FFVGNDFLPH+P L I EGA+ L+ ++YKK + GGY+ + ++ R+E + L+ +E EK Sbjct: 173 PGEGEHKIMEYIRTQKAQPSYNPNTRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGPASRN-----------------RSKELA-------------HQKFYLLHLSLLREYLEFEFQECRSTFTFKYDLEKILDDFILLAFFVGNDFLPHLPGLHINEGALALMFSIYKKVMPSAGGYINEKGVINMARLELI-----LLELENFEK 347
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN1_HUMAN (5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 3.088e-36 Identity = 86/210 (40.95%), Postives = 115/210 (54.76%), Query Frame = 2 Query: 71 PGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK-PYQFLHIWTLREYLDYEFRI--PNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVE-HVFRLGDLMRIEYPE 688 PGEGEHKIM ++R ++ P +DPNTRHCLYGLDADLIML L +HE HFS+LRE V G +K V P++ + LH+ +REY+DYEF + F+ D+E I+DD+I M F VGNDF+PH+P L I A+ LL Y LGGY+ + +L R E ++ +L D R + E Sbjct: 174 PGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGG------------------------------KKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSE 353
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN1_MOUSE (5'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE=1 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.174e-35 Identity = 86/210 (40.95%), Postives = 114/210 (54.29%), Query Frame = 2 Query: 71 PGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK-PYQFLHIWTLREYLDYEFRI--PNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVE-HVFRLGDLMRIEYPE 688 PGEGEHKIM ++R ++ P +DPNTRHCLYGLDADLIML L +HE HFS+LRE V G +K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGNDF+PH+P L I A+ LL Y LGGY+ + +L R E ++ +L D R + E Sbjct: 174 PGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGG------------------------------KKTQRVCAPEETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFSE 353
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_YARLI (5'-3' exoribonuclease 2 OS=Yarrowia lipolytica GN=RAT1 PE=3 SV=3) HSP 1 Score: 147.517 bits (371), Expect = 9.935e-35 Identity = 89/222 (40.09%), Postives = 124/222 (55.86%), Query Frame = 2 Query: 62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEI--DLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFRLGDLMRIEYPEKSTSHRRLLKH 721 + VPGEGEHKIM ++R QR P Y+ NT HC+YGLDADLI L LATHE F +LRE VF +Q+K GH KKP+ +L+I LREYL + R +P +I DLE +DD++F+CFFVGNDFLPH+P ++R+G+IN+L+ +K Y+T +L + + DL++ +T +R+L H Sbjct: 215 ATVPGEGEHKIMEFIRSQRGDPTYNANTSHCIYGLDADLIFLGLATHEPKFKLLREDVF---RQNK-----TAGH-------------------------QKKPFIWLNIDILREYLREDLRFTHPQTKIPFDLERAIDDWVFLCFFVGNDFLPHLPACDVRDGSINVLVNQWKNGMTRWKDYITCDGHVNLAQAQ------DLLK----NFATQEQRILVH 393
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN1_YEAST (5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae GN=KEM1 PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.642e-30 Identity = 74/193 (38.34%), Postives = 112/193 (58.03%), Query Frame = 2 Query: 68 VPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFR--IPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRV 640 VPGEGEHKIM+++R ++ ++ NTRHC+YGLDADLIML L+TH HF++LRE V T G++ N E K+ + + + LH+ LREY++ EF+ FE + E I+DDFI + F +GNDFLP++P L + +GA +L+ +K+ GY+ + K +L+R+ Sbjct: 173 VPGEGEHKIMNFIRHLKSQKDFNQNTRHCIYGLDADLIMLGLSTHGPHFALLREEV-TFGRR--------------NSEKKS---------------LEHQNFYLLHLSLLREYMELEFKEIADEMQFEYNFERILDDFILVMFVIGNDFLPNLPDLHLNKGAFPVLLQTFKEALLHTDGYINEHGKINLKRL 335 The following BLAST results are available for this feature:
BLAST of EY728641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY728641 ID=EY728641; Name=EY728641; organism=Citrus sinensis; type=EST; length=913bpback to top |