EY728614

Overview
NameEY728614
Unique NameEY728614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_BRUO2 (Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=betA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.943e-39
Identity = 92/257 (35.80%), Postives = 141/257 (54.86%), Query Frame = -1
Query:    3 RQGGVRVKYKVNAWTIHPAAKQGSSVRSLRFPAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGV--DEMA 767
            R  GV ++      TI    +   +  S+  P ++ML+GIG    LK  G +L    PGVG+ LQDH+ V IQ     Q ++    L+   +  +G  W+  ++G GA+N+FE  AF R    VEY ++++ FLP+   +    A  + GFQ     MR  SRGSVT  S +P+  P+I+ N+++   D    R  +R TRE+  Q ++D  RG E+ PG H+Q+D E++ +IR++  + FH C TC+MG   D MA
Sbjct:  225 RAVGVEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVYIQQECT-QPITLYSKLNLFSKARIGVEWLLFKTGDGATNHFESAAFVRSKAGVEYPDIQYHFLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDPYRGAEIQPGAHVQTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMA 480          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_BRUME (Choline dehydrogenase OS=Brucella melitensis GN=betA PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.943e-39
Identity = 92/257 (35.80%), Postives = 141/257 (54.86%), Query Frame = -1
Query:    3 RQGGVRVKYKVNAWTIHPAAKQGSSVRSLRFPAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGV--DEMA 767
            R  GV ++      TI    +   +  S+  P ++ML+GIG    LK  G +L    PGVG+ LQDH+ V IQ     Q ++    L+   +  +G  W+  ++G GA+N+FE  AF R    VEY ++++ FLP+   +    A  + GFQ     MR  SRGSVT  S +P+  P+I+ N+++   D    R  +R TRE+  Q ++D  RG E+ PG H+Q+D E++ +IR++  + FH C TC+MG   D MA
Sbjct:  225 RAVGVEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVYIQQECT-QPITLYSKLNLFSKARIGVEWLLFKTGDGATNHFESAAFVRSKAGVEYPDIQYHFLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDPYRGAEIQPGAHVQTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMA 480          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_BRUC2 (Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=betA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.943e-39
Identity = 92/257 (35.80%), Postives = 141/257 (54.86%), Query Frame = -1
Query:    3 RQGGVRVKYKVNAWTIHPAAKQGSSVRSLRFPAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGV--DEMA 767
            R  GV ++      TI    +   +  S+  P ++ML+GIG    LK  G +L    PGVG+ LQDH+ V IQ     Q ++    L+   +  +G  W+  ++G GA+N+FE  AF R    VEY ++++ FLP+   +    A  + GFQ     MR  SRGSVT  S +P+  P+I+ N+++   D    R  +R TRE+  Q ++D  RG E+ PG H+Q+D E++ +IR++  + FH C TC+MG   D MA
Sbjct:  225 RAVGVEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVYIQQECT-QPITLYSELNLFSKARIGVEWLLFKTGDGATNHFESAAFVRSKAGVEYPDIQYHFLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDPYRGAEIQPGAHVQTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMA 480          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_PSEPG (Choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.726e-39
Identity = 83/224 (37.05%), Postives = 131/224 (58.48%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G    L+ L   + H  PGVG+ LQDH+ + +QY+   Q VS   +L    +  +GA WM   +G+GASN FE G F R   + ++ N+++ FLP+   +         GFQ     MR  +RG +   SKDP+  P I  N+++   D ++ R+G+R TRE++AQ + D  RG E+SPG  +Q+D +L+ +IR++A T FH   +C+MG D+MA
Sbjct:  266 PQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELYLQYACT-QPVSLYPSLLWWNQPAIGAEWMFKGTGIGASNQFEAGGFIRTRPEFKWPNIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPARGRIQAKSKDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYRGREISPGADVQTDEQLDKFIREHAETAFHPSCSCKMGTDDMA 488          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_PSEF5 (Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=betA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.726e-39
Identity = 83/224 (37.05%), Postives = 130/224 (58.04%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G    L+ L   + H  PGVG+ LQDH+ + +QY+   Q VS   +L    +  +GA W+   +G+GASN FE G F R  ++ E+ N+++ FLP+   +         GFQ     MR  SRG V   SKDP+  P I  N++    D ++ R+G+R TRE++ Q + D  RG E+SPG  +Q+D +L+ ++R++A T FH   +C+MG D+MA
Sbjct:  266 PQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELYLQYACT-QPVSLYPSLLWWNQPAIGAEWLFNGTGIGASNQFEAGGFIRTREEFEWPNIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPSRGRVQLKSKDPRQHPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDPFRGREISPGIEVQTDEQLDKFVREHAETAFHPSCSCKMGTDDMA 488          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_PSEPK (Choline dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.784e-39
Identity = 83/224 (37.05%), Postives = 131/224 (58.48%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G    L+ L   + H  PGVG+ LQDH+ + +QY+   Q VS   +L    +  +GA WM   +G+GASN FE G F R   + ++ N+++ FLP+   +         GFQ     MR  +RG +   SKDP+  P I  N+++   D ++ R+G+R TRE++AQ + D  RG E+SPG  +Q+D +L+ +IR++A T FH   +C+MG D+MA
Sbjct:  266 PQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELYLQYACT-QPVSLYPSLLWWNQPAIGAEWMFNGTGIGASNQFEAGGFIRTRPEFKWPNIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPARGRIQVKSKDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYRGREISPGADVQTDEQLDKFIREHAETAFHPSCSCKMGTDDMA 488          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_PHOPR (Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.784e-39
Identity = 83/249 (33.33%), Postives = 135/249 (54.22%), Query Frame = -1
Query:   12 GVRVKYKVNAWTIHPAAKQGSSVRSLRFPAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVD 758
            GV ++      +++   +   S  S+  P ++ L+GIG    L+  G  ++H  PGVG+ LQDH+ V  QY+   Q ++    L  + +  +G RW+  + GLGA+N+FE  AF R    +++ N+++ FLP    +    A    GFQ      +P SRG +   S DP   P I  N+++   D +  R+ +R TRE++AQ + D+ RGEE+ PG  + SD  ++AW+R N  + +H   TC+MG D
Sbjct:  233 GVEIEVGGKVQSVYANTEVLLSAGSVGSPQLLQLSGIGPKAVLEQAGIAVKHDLPGVGENLQDHLEVYFQYAC-HQPITLNSKLGLISKGLIGTRWILQKDGLGATNHFESCAFIRSRAGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNKPQSRGRIWITSADPHQKPNIEFNYISTEQDKQDWRDCIRLTREILAQPAMDDYRGEEIQPGADITSDEAMDAWVRQNVESAYHPSCTCKMGSD 480          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_BURM1 (Choline dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=betA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.784e-39
Identity = 89/224 (39.73%), Postives = 125/224 (55.80%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G    LK L   +    PGVG+ LQDH+ + IQY   K+ VS   AL    +  +G  WM   +GLGASN+FE G F R  D   + N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP A P I  N++    D  + R+ +R TRE++ Q + D  RG EL+PG  L+SD EL+A++R  A T FH   +C+MG D+MA
Sbjct:  265 PQLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYEC-KEPVSLYPALKWWNQPKIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINYNGSNAIEMHGFQAHVGSMRSPSRGRVKLRSRDPNAHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPGADLKSDKELDAFVRARAETAFHPSCSCKMGYDDMA 487          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_VIBVU (Choline dehydrogenase OS=Vibrio vulnificus GN=betA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.147e-38
Identity = 83/230 (36.09%), Postives = 129/230 (56.09%), Query Frame = -1
Query:    9 SSVRSLRFPAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDE 698
            SS  S+    ++ L+GIG    L+  G    HH PGVG+ LQDH+ V  QY   K  ++    L    +  +GA W+  R GLGA+N+FE  AF R    +++ N+++ FLP    +    A    GFQ      +P SRG V   S +P   P I+ N+L+   D +  R+ +R TRE++AQ + DE RGEE+ PG ++ +DAE++ W+++N  + +H   +C+MG D+
Sbjct:  253 SSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVHHLPGVGQNLQDHLEVYFQYHCQKP-ITLNGKLDWFSKGLIGAEWILTRKGLGATNHFESCAFIRSRAGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNKPESRGRVEIVSANPSDKPKIQFNYLSTERDRQDWRDCIRLTREILAQPAMDEFRGEEIQPGINVATDAEIDQWVKENVESAYHPSCSCKMGADD 481          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_BURP8 (Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=betA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.147e-38
Identity = 87/224 (38.84%), Postives = 126/224 (56.25%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G    L+ L   +    PGVG+ LQDH+ + +QY   K+ VS   AL    +  +G  WM   +G+GASN+FE G F R  D   + N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP+  P I  N++    D  + R+ +R TRE+IAQ + D  RG ELSPG  LQSDA+++A++R  A T +H   +C MG D+MA
Sbjct:  265 PQILQRSGVGPGGWLRDLDIPVVLDLPGVGQNLQDHLEMYMQYEC-KEPVSLYPALLLRNQPAIGIEWMLKGTGIGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINYNGTNAIKMHGFQAHVGSMRSPSRGRVKLRSRDPREHPSILFNYMAEALDWREFRDAIRITREIIAQPALDRFRGRELSPGAELQSDAQIDAFVRARAETAYHPSCSCAMGYDDMA 487          
The following BLAST results are available for this feature:
BLAST of EY728614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
BETA_BRUO23.943e-3935.80Choline dehydrogenase OS=Brucella ovis (strain ATC... [more]
BETA_BRUME3.943e-3935.80Choline dehydrogenase OS=Brucella melitensis GN=be... [more]
BETA_BRUC23.943e-3935.80Choline dehydrogenase OS=Brucella canis (strain AT... [more]
BETA_PSEPG6.726e-3937.05Choline dehydrogenase OS=Pseudomonas putida (strai... [more]
BETA_PSEF56.726e-3937.05Choline dehydrogenase OS=Pseudomonas fluorescens (... [more]
BETA_PSEPK8.784e-3937.05Choline dehydrogenase OS=Pseudomonas putida (strai... [more]
BETA_PHOPR8.784e-3933.33Choline dehydrogenase OS=Photobacterium profundum ... [more]
BETA_BURM18.784e-3939.73Choline dehydrogenase OS=Burkholderia multivorans ... [more]
BETA_VIBVU1.147e-3836.09Choline dehydrogenase OS=Vibrio vulnificus GN=betA... [more]
BETA_BURP81.147e-3838.84Choline dehydrogenase OS=Burkholderia phymatum (st... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728614 ID=EY728614; Name=EY728614; organism=Citrus sinensis; type=EST; length=782bp
ACCGCCATCTCGTCCACCCCCATGCGGCAGGTGGAACAGGCGTGGAAAGT
GGTGCCGGCGTTGTCGCGGATCCAGGCTTCCAGCTCGGCATCGCTCTGCA
GGTGCTTGCCGGGGCTGAGCTCCTCGCCGCGCAGTTCGTCCCAGGAGCGC
TGGGCGATCATTTCCCGGGTCTTGCGCAGGCCTTCGCGCAGTTGCTCCAG
GTCGCCCGGCGCGGTGAGGAAGTTCAGGCGGATCAGCGGATCGGCCTTGG
GATCCTTCGAGGCCANGGTGACGCTGCCACGACTGGCCGGGCGCATGACG
CTGGTGAAGTACTGGAAGCCCGGGGTGATGCGCGCCTTGCCGCGGTAGAA
CTCGCCCACCATGGGGAGAAATTCGTGCTCCAGGTTGGCGTACTCGACCT
GGTCGTTGCCACGGAAGAACGCCCCCACCTCGAAGTAGTTGGACGCCCCC
AGGCCACTGCGCGCGGCCATCCAGCGCGCCCCGACGAACAGCCGCCCGAG
CGGCGACAGCGCGCGGGTCGGCGACACACCCTGCTTGGGCGTCGAATACT
GGATCGCCACGGGCACGTGGTCCTGCAGGTNCTTGCCGACCCCGGGGCAG
TGGTGGCGCAGCTCNATGCCGAGGGGCTTGAGCTCGTCCGGATCACCGAT
GCCGGCGAGCATCACAACTGCCGGGAACCGGAGGGACCGGACTGAGGATC
CTTGCTTGGCGGCAGGATGGATTGTCCAGGCATTGACTTTGTATTTCACC
CTAACGCCTCCTTGCCGAAAAAACCACCCGCC
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