EY728489

Overview
NameEY728489
Unique NameEY728489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_GEOBB (Ribosome-recycling factor OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=frr PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.201e-23
Identity = 57/150 (38.00%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  316 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKESAD 759
            M+ +I +L +E  K+RTGRAS  +LD I V++ G   PLN +A +++ +++T++I+P+D   +  +E AI++S LGLNP  DG+ +   +P LT+E  + + K + + +ED K ++R  R+ A+D +KK     S+  D  KR EKE  D
Sbjct:   13 MDKSIESLRKEYQKVRTGRASTSLLDDIKVDSYGTLSPLNQVATLAIPEARTITISPWDSKMIAPIEKAIMNSNLGLNPANDGKMIRLTLPPLTEERRKDIVKQLKRDAEDAKVALRNIRRDAIDQLKKLEKDKSISEDEQKRAEKEVQD 162          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_LEUCK (Ribosome-recycling factor OS=Leuconostoc citreum (strain KM20) GN=frr PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.159e-22
Identity = 61/147 (41.50%), Postives = 89/147 (60.54%), Query Frame = 1
Query:  310 SQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPXDSMKRLEKE 750
            S+M+ A  AL RELT +RTGRA+P +LD I VE  G   PLN +A +SV +++ L I P+D   L+E+  AI  S LGLNP  DG  +   IP +T+E  + + K V   +E  K S+R  R+ A+D +KK    +P D +++ E +
Sbjct:   10 SRMQGAQDALQRELTSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARVLLITPFDKTALEEIIRAINMSDLGLNPSSDGNIVRLMIPQMTEEGRKDLAKQVKAEAEKAKVSVRNVRRDAMDSVKKE-KEMPEDDVRKAEND 155          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_DESDG (Ribosome-recycling factor OS=Desulfovibrio desulfuricans (strain G20) GN=frr PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.513e-22
Identity = 62/156 (39.74%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  289 TVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            T+   T  +ME A+ AL RE  +LRTGRAS  ++D I V+  G   P+N LA V+V DS+T++I P+D      +E AI+ S LGL P  DG+ +  ++P LT+E  + + KV  K +ED K ++R  R+ A + +KK     ++  D MKR + E
Sbjct:    3 TILLETEERMEKAVAALDREFGRLRTGRASTSLVDSIKVDYYGTPTPINQLASVAVPDSRTITIQPWDRGAFALVEKAIMQSDLGLTPINDGKIIRISMPPLTEERRKELVKVAKKYTEDAKVAVRNIRRDANEQIKKMEKDKAITEDDMKRGQDE 158          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_DEHSC (Ribosome-recycling factor OS=Dehalococcoides sp. (strain CBDB1) GN=frr PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.513e-22
Identity = 59/151 (39.07%), Postives = 92/151 (60.93%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKR 738
            + + +  +M A++  L +EL+ +RTGR+SP +++HI VE  GV  P+NHLA +S  D + ++I P+D + L  +E AI+ S LGL P  DG  +   IP L++E  Q M K+V K  E+ K ++R  R+ A+D MKK      +  D +KR
Sbjct:    5 ILQKSEKKMSASLDVLLQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLANISAPDPRYITIQPWDRSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKIVNKRLEEDKIAMRNVRRDAMDEMKKLEKAKEISQDDLKR 155          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_GEOSL (Ribosome-recycling factor OS=Geobacter sulfurreducens GN=frr PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.976e-22
Identity = 58/152 (38.16%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  310 SQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKESAD 759
            S ME ++ +L RE  K+RTGRA+ G+LD I V+  G   PLN +A ++V + +T++I P++   +  +E AI+++ LG  P  DG+ +  ++P LT+E  + + K + KT+ED K +IR  R+ A+D +KK      +  D +KR EKE  D
Sbjct:   11 SHMEKSVESLRREYQKVRTGRANTGLLDEIRVDFYGNPSPLNQVATLAVPEPRTITIQPWETKMIPVIEKAILNANLGFTPSNDGKLIRISLPPLTEERRKEIVKSLKKTAEDAKIAIRNIRRDAIDGLKKLEKDKKISEDDLKRAEKEVQD 162          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACA2 (Ribosome-recycling factor OS=Bacillus amyloliquefaciens (strain FZB42) GN=frr PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.976e-22
Identity = 54/133 (40.60%), Postives = 85/133 (63.91%), Query Frame = 1
Query:  304 TVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            T  +ME A+ A SREL  +R GRA+P +LD + VE  G + PLN L+ ++V +++ L + PYD   + ++E AI+ + LG+ P  DG  +  AIPALT+E  + + KVV K +E+ K ++R  R+ + D +KK
Sbjct:    9 TKERMEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTPYDKTAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVRRDSNDDLKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_ALKOO (Ribosome-recycling factor OS=Alkaliphilus oremlandii (strain OhILAs) GN=frr PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.976e-22
Identity = 57/148 (38.51%), Postives = 85/148 (57.43%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            +M   I AL  EL  +R GRA+P MLD I+VE  G   P+  +A ++  + + +SI PYD + L  +E AI+ S LG+NP  DG+ +   +P LT+E  + + KV  KTSED K  +R  R+ A D +KK    + +  D +K  + E
Sbjct:   12 KMNKTINALKDELASIRAGRANPAMLDRIVVEYYGSPTPIKQIAAITAPEPRIISIQPYDGSALSSIEKAILQSDLGVNPSNDGKLIRIIVPQLTEERRKELTKVAKKTSEDAKVVLRNERRNANDRLKKMQKDNEITEDELKTAQDE 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_GEOSW (Ribosome-recycling factor OS=Geobacillus sp. (strain WCH70) GN=frr PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.581e-22
Identity = 55/134 (41.04%), Postives = 85/134 (63.43%), Query Frame = 1
Query:  301 TTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            T   +M+ A+ A +REL  +R GRA+P +L+ + V+  G+  P+  LA +SV +++ L I PYD + +K++E AI+SS LGL P  DG  +   IP LT+E  + + K+V K SED K ++R  R+ A D +KK
Sbjct:    8 TAKEKMDKAVQAFTRELATIRAGRANPSLLEKVTVDYYGMPTPIIQLASISVPEARLLVIQPYDKSVIKDIEKAILSSDLGLTPSNDGSVIRITIPPLTEERRRELVKLVKKYSEDAKVAVRNIRRDANDELKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_STRMU (Ribosome-recycling factor OS=Streptococcus mutans GN=frr PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.403e-22
Identity = 59/155 (38.06%), Postives = 93/155 (60.00%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPXDSMKRLEKE 750
            + E    + E +  +L+RE   +R GRA+  +LD I VE  GV  PLN LA ++V +++ L ++P+D ++LK++E AI +S +G+NP  DG  +   IPALT+E  + + K V K  E+ K +IR  R+ A+D  KK      +  D +K LEK+
Sbjct:    5 IVEKAKERFEQSHQSLAREFGSIRAGRANASLLDRIEVEYYGVPTPLNQLASITVPEARVLLVSPFDKSSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKVAIRNIRRDAMDEAKKQEKIKEITEDELKSLEKD 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CHLSY (Ribosome-recycling factor OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=frr PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.403e-22
Identity = 55/131 (41.98%), Postives = 82/131 (62.60%), Query Frame = 1
Query:  310 SQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            + ++ A  AL   L  +RTGRAS  +++H+ VE  G+ MPLN LA +SV + + + I PYD N +K +E AI  S LGLNP  DG+ +   +P LT+E  + + K+V    E+VK S+R  R+ A+D +KK
Sbjct:   11 AHLKKATEALRHHLASIRTGRASSALVEHLHVEAYGMTMPLNQLANISVPEPRLIVIQPYDANMIKAIEKAIQQSDLGLNPSNDGRVIRLPVPPLTEERRRELVKMVRHRVEEVKISVRNQRRDAIDDLKK 141          
The following BLAST results are available for this feature:
BLAST of EY728489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_GEOBB5.201e-2338.00Ribosome-recycling factor OS=Geobacter bemidjiensi... [more]
RRF_LEUCK1.159e-2241.50Ribosome-recycling factor OS=Leuconostoc citreum (... [more]
RRF_DESDG1.513e-2239.74Ribosome-recycling factor OS=Desulfovibrio desulfu... [more]
RRF_DEHSC1.513e-2239.07Ribosome-recycling factor OS=Dehalococcoides sp. (... [more]
RRF_GEOSL1.976e-2238.16Ribosome-recycling factor OS=Geobacter sulfurreduc... [more]
RRF_BACA21.976e-2240.60Ribosome-recycling factor OS=Bacillus amyloliquefa... [more]
RRF_ALKOO1.976e-2238.51Ribosome-recycling factor OS=Alkaliphilus oremland... [more]
RRF_GEOSW2.581e-2241.04Ribosome-recycling factor OS=Geobacillus sp. (stra... [more]
RRF_STRMU4.403e-2238.06Ribosome-recycling factor OS=Streptococcus mutans ... [more]
RRF_CHLSY4.403e-2241.98Ribosome-recycling factor OS=Chloroflexus aurantia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728489 ID=EY728489; Name=EY728489; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGATAACGAAAAATCATGGCAATGCATCTAAGACGAGCAAT
CTCTAATCGAAACGCAACACTGCTTCTTAGAAATGGAAGCTCTTCTCTTC
AATCACAGCGAAGCTGGTTCCATACTCCCTGCTCCCGCAGTAATGGGTTC
TTTAGGACCCGGTACAGTGATCCAAGTCTTTCGGCTTTCGGCTTCATGCA
AGGTTGTCGTCGAGGATTCGCCAAAGGCAAAAGATCAAAGGATGATTCTG
GTGCTGGAAGTACAGTTGAAATTGTGGATATTGGTCCCACTGTTAAGGAA
ACTACTGTCTCACAGATGGAAGCAGCAATAGTTGCATTGTCACGCGAACT
GACCAAATTAAGAACAGGAAGGGCGTCACCAGGAATGCTTGACCACATTA
TTGTTGAAACTGGTGGAGTGAAGATGCCCTTGAATCATTTAGCTGTTGTT
TCAGTGCTAGATTCTAAGACCTTATCAATTAATCCCTATGATCCAAATAC
CCTGAAAGAGTTAGAGTGCGCCATTGTTTCATCTCCGCTAGGGTTAAATC
CTAAAGTGGATGGGCAACGTTTGATTGCAGCTATTCCAGCATTGACCAAA
GAGCATATCCAGGCAATGTGTAAGGTAGTAGCCAAGACGAGTGAAGATGT
CAAACAAAGTATTAGAAGGTCTCGGCAGAAGGCGTTGGATATGATGAAGA
AAGCAGGTTCAAGTTTGCCCANGGATTCAATGAAGAGATTGGAGAAAGAG
TCAGCGGATGATATCNTGCAGGCAAAAGAGAAGGAAATNATGAAGGCTGA
GTCTGCTGATACATTTCGGATATTATTGAAACGCGTTGGAATATGGACAA
CTGAAANACTATCAAAACCCTTCACTTATCATATCCTGAATCTTNGTATT
TTTCCTAGTCATGAGAGGCNAGGTAATGC
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