EY728325

Overview
NameEY728325
Unique NameEY728325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_PROMT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL2A) GN=ispH PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.202e-57
Identity = 102/178 (57.30%), Postives = 134/178 (75.28%), Query Frame = 1
Query:   13 ELMNQQYASDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKDMKE 546
            + + + Y S +I  ++ENG     G + VKLAEA+GFCWGVER+V +AYE RK +P+E+IWIT+EI+H+PS+N  L +M V  I  E+G K F VV  GDVV+LPAFGA V++M  L+D+   I+DTTCP VSKVW TVEKHKK  +TSIIHGKY HEET+AT+SFAG Y++  D++E
Sbjct:   29 QALAEAYQSGLIGSIRENGNLLEHGRLKVKLAEAFGFCWGVERSVAMAYETRKHYPNERIWITNEIIHNPSVNDHLRKMNVLFISEEKGVKDFSVVKDGDVVILPAFGATVQDMKLLHDRGCHIIDTTCPWVSKVWHTVEKHKKHTFTSIIHGKYKHEETLATSSFAGTYLVLFDLEE 206          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_PROM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL1A) GN=ispH PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.202e-57
Identity = 102/178 (57.30%), Postives = 134/178 (75.28%), Query Frame = 1
Query:   13 ELMNQQYASDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKDMKE 546
            + + + Y S +I  ++ENG     G + VKLAEA+GFCWGVER+V +AYE RK +P+E+IWIT+EI+H+PS+N  L +M V  I  E+G K F VV  GDVV+LPAFGA V++M  L+D+   I+DTTCP VSKVW TVEKHKK  +TSIIHGKY HEET+AT+SFAG Y++  D++E
Sbjct:   29 QALAEAYQSGLIGSIRENGNLLEHGRLKVKLAEAFGFCWGVERSVAMAYETRKHYPNERIWITNEIIHNPSVNDHLRKMNVLFISEEKGVKDFSVVKDGDVVILPAFGATVQDMKLLHDRGCHIIDTTCPWVSKVWHTVEKHKKHTFTSIIHGKYKHEETLATSSFAGTYLVLFDLEE 206          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_GLOVI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gloeobacter violaceus GN=ispH PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.377e-47
Identity = 87/184 (47.28%), Postives = 131/184 (71.20%), Query Frame = 1
Query:    7 VRELMNQQYASDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEG----KKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKDMKE 546
            V++ +  +Y S +I +++ NGY    G VTV+LAEA+GFCWGV++AV +AYE  + F   ++WIT+EI+H+P +N+ L  M ++ +  +E      K F+ V++ DVV+LPAFGA+ +EM  L++KN  IVDTTCP VS VW  V K+ + ++TSIIHGKY HEET+ATAS A +Y++  +++E
Sbjct:   17 VQDDLKAEYESSLIHEIRANGYTLRRGGVTVRLAEAFGFCWGVDKAVSMAYETHRMFAGRQLWITNEIIHNPLVNQHLRAMGIRFLDEDESGRRVPKDFERVSEKDVVILPAFGASTQEMQILDEKNCVIVDTTCPWVSAVWNRVGKYDRAEFTSIIHGKYQHEETVATASRARRYLVVLNLEE 200          

HSP 2 Score: 22.3274 bits (46), Expect = 1.377e-47
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  648 LIQAEYVCDYILGG 689
            L +A+ VCDYIL G
Sbjct:  198 LEEAQQVCDYILHG 211          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_THETN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter tengcongensis GN=ispH PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.960e-19
Identity = 51/133 (38.35%), Postives = 80/133 (60.15%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETI 495
            + +AE  GFC+GV+RA++IAYE   +  D +++   EI+H+P + K LEE  V++I  EE +K    + KGD +++ + G + +    L  K V+I+D TCP V KV   VE++ K  Y  +I G  +H E I
Sbjct:    3 ILIAEHAGFCFGVKRAIEIAYEELNKQKDTRLYTLGEIIHNPQVVKDLEEKGVRVIEEEELEK----LLKGDRLIIRSHGISKKLYEFLEQKGVEIIDVTCPFVKKVQNIVEEYYKKGYDIVIVGDKNHPEVI 131          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_CLOTE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium tetani GN=ispH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.061e-15
Identity = 40/135 (29.63%), Postives = 76/135 (56.30%), Query Frame = 1
Query:   91 VTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETI 495
            +++ LA+  GFC+GV+RAV    + ++ +PD+ I+    ++H+  +   L+   +  I    G +  D + +GD+++L + G  +E +  L +K + I+D TCP VS +    +K+ K  Y+ +I G  +H E I
Sbjct:    1 MSIILAKKSGFCYGVKRAVDTCLKIKQNYPDKIIYTLGPLIHNNDVVDFLKTKNIFSI----GYENIDTLKEGDIIILRSHGVTLETIQKLKEKKLNIIDATCPYVSNIQKKAQKYYKEGYSILIVGDKNHPEVI 131          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_GEOSM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Geobacter sp. (strain M21) GN=ispH PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.820e-15
Identity = 53/152 (34.87%), Postives = 79/152 (51.97%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASF-AGKYIIXKDMKEV 549
            V LA+  GFC+GV+RA Q+A+EA       + +    I+HSP + +RLEEM V  IPVE+  +    V  G  +++ + G A EE+      N+++VD TCP V K    V    K  Y  ++ G   H E     S+ AG+  +    K+V
Sbjct:    3 VILAKHAGFCFGVKRATQLAFEAADT--GSETYTLGPIIHSPQVVQRLEEMGV--IPVEDVSE----VETGGTIIIRSHGVAAEELEAAVRANLEVVDATCPFVKKAQEHVATLSKEGYDIVVVGDAVHPEVQGIVSYAAGRVYVVSSDKDV 146          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_THEPX (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter sp. (strain X514) GN=ispH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 44/133 (33.08%), Postives = 75/133 (56.39%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETI 495
            + +AE  GFC+GV+RA++ AY+  ++   +KI+   EI+H+P +   L +  V +I  EE     D + +GD +++ + G + +    L  K V+++D TCP V KV   V ++    Y+ II G  +H E I
Sbjct:    3 ILIAEYAGFCFGVKRAIETAYQEIEKGDGKKIYTLGEIIHNPQVISDLSKKGVNVIEEEE----LDKLTEGDKLIIRSHGVSKKLYDFLAKKGVEVIDVTCPFVKKVQNIVYEYYHKGYSIIIVGDRNHPEVI 131          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_THEP3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ispH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 44/133 (33.08%), Postives = 75/133 (56.39%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETI 495
            + +AE  GFC+GV+RA++ AY+  ++   +KI+   EI+H+P +   L +  V +I  EE     D + +GD +++ + G + +    L  K V+++D TCP V KV   V ++    Y+ II G  +H E I
Sbjct:    3 ILIAEYAGFCFGVKRAIETAYQEIEKGDGKKIYTLGEIIHNPQVISDLSKKGVNVIEEEE----LDKLTEGDKLIIRSHGVSKKLYDFLAKKGVEVIDVTCPFVKKVQNIVYEYYHKGYSIIIVGDRNHPEVI 131          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_PELPD (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pelobacter propionicus (strain DSM 2379) GN=ispH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 48/140 (34.29%), Postives = 74/140 (52.86%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAG 516
            V LA+  GFC+GV+RA Q+A+EA     D+K +    I+HSP + K+LEEM V+ +      K  D ++ G +++  + G A  E+     K ++IVD TCP V K    V+   +  Y  ++ G   H E     S+ G
Sbjct:    3 VILAKRAGFCFGVKRATQMAFEAAGM--DKKTYTLGPIIHSPQVVKKLEEMGVRAL------KDLDSMDSGTIIIR-SHGVASHEIAEAMQKKLEIVDATCPFVKKAQEHVKSLSETGYGVVVVGDADHPEVQGIVSYGG 133          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_PELCD (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ispH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 48/150 (32.00%), Postives = 82/150 (54.67%), Query Frame = 1
Query:  103 LAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASF--AGKYIIXKDMKE 546
            LA++ GFC+GV+RA  +A++A +QF  E I     I+HSP + K+LEE  +K+I      ++ + ++ G  V++ + G   EE+  ++D+ ++IVD TCP V K            Y+ ++ G+  H E     S+   G+  +  D KE
Sbjct:    5 LADSAGFCFGVKRATNLAFDAAEQF--EHICSLGPIIHSPQVVKKLEEKGIKVI------RKVEDIDHG-AVIIRSHGITAEELDIIHDRELKIVDATCPFVKKAQDYATMLCNEGYSVVLVGEKDHPEVQGIISYTRGGEVFVVADCKE 145          
The following BLAST results are available for this feature:
BLAST of EY728325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
ISPH_PROMT7.202e-5757.304-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM17.202e-5757.304-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GLOVI1.377e-4747.284-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THETN5.960e-1938.354-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CLOTE3.061e-1529.634-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GEOSM6.820e-1534.874-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEPX8.907e-1533.084-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEP38.907e-1533.084-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PELPD8.907e-1534.294-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PELCD8.907e-1532.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-C09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728325 ID=EY728325; Name=EY728325; organism=Citrus sinensis; type=EST; length=784bp
CCACGCGTCCGAGAGCTCATGAATCAACAGTACGCAAGTGATATTATAAA
GAAATTGAAGGAGAATGGATACGAGTATACGTGGGGAAATGTTACGGTGA
AGCTGGCCGAAGCATATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGCAG
ATTGCTTATGAAGCAAGAAAACAGTTTCCCGATGAGAAGATCTGGATTAC
CAGTGAAATCCTTCACAGTCCATCTATCAACAAGCGGTTGGAGGAGATGG
AAGTTAAAATTATACCTGTTGAGGAAGGAAAGAAGCAATTTGATGTGGTA
AATAAGGGTGATGTTGTGGTTTTGCCTGCATTTGGGGCTGCAGTTGAAGA
AATGGTGACTCTGAATGACAAGAATGTACAGATCGTTGATACAACTTGCC
CTTGAGTGTCGAAGGTCTGGACTACTGTTGAGAAGCACAAGAAGGGAGAC
TATACTTCAATTATTCACGGTAAATATTCTCATGAGGAAACTATAGCAAC
TGCATCTTTTGCAGGAAAGTATATCATANTCAAGGATATGAAAGAGGTAT
GTTCGGAAGGTGGATTATATTATATTTTCTGGAGAATCTGTANAAGCATA
TTAGGAGATATTCATTAGAATGTTTTTTTCTTTTCAATTGTTATTATTTA
ATCCAGGCTGAGTACGTGTGTGATTACATTCTGGGGGGTGAACTTTATGG
ATCTACCCTTACAAAAGAAGCCTCCTTGAGGAATTCCAGAAACCCGTTCA
AAAGGGTTGATCCAGATGTTGACCCGGCACAGTT
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