EY728325

Overview
NameEY728325
Unique NameEY728325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_GEOBB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=ispH PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.773e-14
Identity = 51/152 (33.55%), Postives = 78/152 (51.32%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASF-AGKYIIXKDMKEV 549
            V LA+  GFC+GV+RA Q+A++A       + +    I+HSP + +RLEEM V  IPV+   +    V  G  +++ + G A EE+      N+++VD TCP V K    V    K  Y  ++ G   H E     S+ AG+  +    K+V
Sbjct:    3 VILAKHAGFCFGVKRATQLAFQAANI--GSETYTLGPIIHSPQVVQRLEEMGV--IPVDNVSE----VETGGTIIIRSHGVAAEELEAAVRANLEVVDATCPFVKKAQEHVATLSKEGYDIVVVGDAVHPEVQGIVSYAAGRVYVVSSHKDV 146          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_GEOMG (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=ispH PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.540e-14
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  103 LAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFA-GKYIIXKDMKE 546
            LA+  GFC+GV+RA Q+A+EA ++  + K +    I+HSP +  RLEEM VK++      K    +  G ++V  + G   EE+     K +++VD TCP V K    V+   +  Y  ++ G   H E     S+A GK  +    +E
Sbjct:    5 LAKRAGFCFGVKRATQMAFEAAEK--EGKTYSLGPIIHSPQVVHRLEEMGVKVL------KGLGEITDGTIIVR-SHGVTSEELEEAVRKELEVVDATCPFVKKAQENVQNLSEAGYEVVVVGDADHPEVQGIVSYAKGKVCVVGSEEE 144          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_GEOLS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=ispH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.680e-13
Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASF 510
            V LA+  GFC+GV+RA Q+A+EA  +  D+K +    I+HSP +  +LEEM V ++      K    V+ G V++  + G    EM   + K +++VD TCP V K    V+   +  Y  ++ G   H E     S+
Sbjct:    3 VILAKRAGFCFGVKRATQMAFEAAGK--DQKTFTLGPIIHSPQVVNKLEEMGVGVV------KDLSGVSNGTVIIR-SHGVLASEMDEAHQKQLEVVDATCPFVKKAQEHVQYLSEAGYDVLVVGDADHPEVQGIVSY 131          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_MYCLE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mycobacterium leprae GN=ispH PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.194e-13
Identity = 43/143 (30.07%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYI 525
            V LAE  G+C GV+RAV+    + +++    +++  EI+H+  + + LE      +      ++ D V +G +V+  A G A        ++N++ +D TCP V+KV   V++  + DY  ++ G   HEE IATA  A  ++
Sbjct:   25 VLLAEPRGYCAGVDRAVETVERSLRKY-GPPVYVRHEIVHNRHVVETLERAGAVFV------EETDYVPEGAIVIFSAHGVAPTVYAAAAERNLRTIDATCPLVTKVHNEVKRFARNDYDILLIGHEGHEEVIATAGEAPTHV 160          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_NITSB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nitratiruptor sp. (strain SB155-2) GN=ispH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.865e-13
Identity = 43/151 (28.48%), Postives = 81/151 (53.64%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKDMKEV 549
            ++LA++YGFC+GV+RA++IA E+        +     I +   I++  E+  V+++      ++ D + +   VV+   G   E++  L +KNV+++D TCP V+K    V K  +  Y+ +I G  +H E     S+A   I+   ++E+
Sbjct:    3 IRLAKSYGFCFGVKRAIKIAEES-----PNSVTFGPLIHNKNEIDRLKEKYNVELV------EEIDEIQENSRVVIRTHGIPKEKLALLKEKNVEVIDATCPFVTKPQEIVSKMSEEGYSIVIFGDINHPEIKGVMSYATDPIVVLSVEEL 142          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_CLOAB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium acetobutylicum GN=ispH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.887e-13
Identity = 48/158 (30.38%), Postives = 88/158 (55.70%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFA-GKYIIXK---DMKEVCSE 558
            V LAE  GFC+GV+RAV +A   +K++ ++KI+   E++H+  +  +L++  V  I +E+     D + + DV+++ + G + E    L  K + +++ TCP V+K+   V+K+ +  Y  +I G   H E I    +   K II K   +++ + SE
Sbjct:    4 VMLAEKAGFCFGVKRAVDMALLTQKEY-NKKIYTLGELIHNNDVVDKLKDNNVYPIGIED----IDNLKENDVILIRSHGISEEIYKILLSKGLTVINATCPFVTKIQEKVKKYNELGYDIVIVGDKYHPEVIGINGWCDNKAIISKQGENLENITSE 156          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_GEOUR (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Geobacter uraniireducens (strain Rf4) GN=ispH PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFA 513
            V LA+  GFC+GV+RA Q+A+EA  +    K +    I+HSP + ++LEEM VK +      K    ++ G +++  + G A  E+     K ++IVD TCP V K    VE   +  Y  ++ G   H E     S+A
Sbjct:    3 VILAKQAGFCFGVKRATQMAFEAADK--GGKTYTLGPIIHSPQVVQKLEEMGVKAL------KDISGMDDGTIIIR-SHGVASGELEEAVRKELEIVDATCPFVKKAQEHVESLSQAGYDVVVVGDADHPEVQGIVSYA 132          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_GEOSL (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Geobacter sulfurreducens GN=ispH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 44/139 (31.65%), Postives = 74/139 (53.24%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFA 513
            + LA+  GFC+GV+RA Q+A+EA ++  + + +    I+HSP + +RLE M VK++   EG      +  G V++  + G    E+     + +++VD TCP V K    V++     YT ++ G   H E     S+A
Sbjct:    3 IVLAKRAGFCFGVKRATQMAFEAAEK--EGETFTLGPIIHSPQVVQRLEGMGVKVLSDLEG------IGNGTVIIR-SHGVTSAELEDAVRRQLEVVDATCPFVKKAQEHVKRLSHDGYTVVVVGDADHPEVQGIVSYA 132          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_GEOSF (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Geobacter sp. (strain FRC-32) GN=ispH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 48/149 (32.21%), Postives = 74/149 (49.66%), Query Frame = 1
Query:  103 LAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFA-GKYIIXKDMKE 546
            LA+  GFC+GV+RA QIA+EA  +    K +    I+HSP + ++LEEM VK +    G  +         +++ + GAA +E+     K + I+D TCP V K    V+      Y  ++ G   H E     S+A GK  +    +E
Sbjct:    5 LAKQAGFCFGVKRATQIAFEAAGK--GGKTFTLGPIIHSPQVVQKLEEMGVKALENVAGMDE-------GTIIIRSHGAASDELEEAVRKQLDILDATCPFVKKAQEHVKNLSNSGYDVVVVGDADHPEVQGIVSYATGKVYVVASGEE 144          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_AQUAE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Aquifex aeolicus GN=ispH PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 47/157 (29.94%), Postives = 83/157 (52.87%), Query Frame = 1
Query:   91 VTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFA----GKYIIXKDMKEV 549
            V + +AE  GFC+GV+RAV++A E+ K+    K++    I+H+P    RL+ + V     EE K+       GD V++ + G   E+   L  K ++++D TCP V  V   V +  +  Y  ++ G+ +H E I T  +     GK I+ + ++++
Sbjct:    2 VDIIIAEHAGFCFGVKRAVKLAEESLKE-SQGKVYTLGPIIHNPQEVNRLKNLGVFPSQGEEFKE-------GDTVIIRSHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDI 150          
The following BLAST results are available for this feature:
BLAST of EY728325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
ISPH_GEOBB5.773e-1433.554-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GEOMG7.540e-1432.894-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GEOLS1.680e-1333.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_MYCLE2.194e-1330.074-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NITSB2.865e-1328.484-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CLOAB4.887e-1330.384-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GEOUR1.089e-1233.814-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GEOSL1.422e-1231.654-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GEOSF1.422e-1232.214-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_AQUAE1.422e-1229.944-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-C09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728325 ID=EY728325; Name=EY728325; organism=Citrus sinensis; type=EST; length=784bp
CCACGCGTCCGAGAGCTCATGAATCAACAGTACGCAAGTGATATTATAAA
GAAATTGAAGGAGAATGGATACGAGTATACGTGGGGAAATGTTACGGTGA
AGCTGGCCGAAGCATATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGCAG
ATTGCTTATGAAGCAAGAAAACAGTTTCCCGATGAGAAGATCTGGATTAC
CAGTGAAATCCTTCACAGTCCATCTATCAACAAGCGGTTGGAGGAGATGG
AAGTTAAAATTATACCTGTTGAGGAAGGAAAGAAGCAATTTGATGTGGTA
AATAAGGGTGATGTTGTGGTTTTGCCTGCATTTGGGGCTGCAGTTGAAGA
AATGGTGACTCTGAATGACAAGAATGTACAGATCGTTGATACAACTTGCC
CTTGAGTGTCGAAGGTCTGGACTACTGTTGAGAAGCACAAGAAGGGAGAC
TATACTTCAATTATTCACGGTAAATATTCTCATGAGGAAACTATAGCAAC
TGCATCTTTTGCAGGAAAGTATATCATANTCAAGGATATGAAAGAGGTAT
GTTCGGAAGGTGGATTATATTATATTTTCTGGAGAATCTGTANAAGCATA
TTAGGAGATATTCATTAGAATGTTTTTTTCTTTTCAATTGTTATTATTTA
ATCCAGGCTGAGTACGTGTGTGATTACATTCTGGGGGGTGAACTTTATGG
ATCTACCCTTACAAAAGAAGCCTCCTTGAGGAATTCCAGAAACCCGTTCA
AAAGGGTTGATCCAGATGTTGACCCGGCACAGTT
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