EY728325

Overview
NameEY728325
Unique NameEY728325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH1_MYCTU (4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1 OS=Mycobacterium tuberculosis GN=ispH1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.425e-12
Identity = 42/143 (29.37%), Postives = 75/143 (52.45%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYI 525
            V LAE  G+C GV+RAV+    A ++     +++  EI+H+  +   L +     +      ++ + V +G +VV  A G A    V+ +++N+Q++D TCP V+KV     +  + DY  ++ G   HEE + TA  A  ++
Sbjct:   28 VLLAEPRGYCAGVDRAVETVERALQKH-GPPVYVRHEIVHNRHVVDTLAKAGAVFV------EETEQVPEGAIVVFSAHGVAPTVHVSASERNLQVIDATCPLVTKVHNEARRFARDDYDILLIGHEGHEEVVGTAGEAPDHV 163          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH1_MYCBO (4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1 OS=Mycobacterium bovis GN=ispH1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.425e-12
Identity = 42/143 (29.37%), Postives = 75/143 (52.45%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYI 525
            V LAE  G+C GV+RAV+    A ++     +++  EI+H+  +   L +     +      ++ + V +G +VV  A G A    V+ +++N+Q++D TCP V+KV     +  + DY  ++ G   HEE + TA  A  ++
Sbjct:   28 VLLAEPRGYCAGVDRAVETVERALQKH-GPPVYVRHEIVHNRHVVDTLAKAGAVFV------EETEQVPEGAIVVFSAHGVAPTVHVSASERNLQVIDATCPLVTKVHNEARRFARDDYDILLIGHEGHEEVVGTAGEAPDHV 163          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_MYCUA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mycobacterium ulcerans (strain Agy99) GN=ispH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.057e-12
Identity = 42/143 (29.37%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYI 525
            V LAE  G+C GV+RAV+    A ++     +++  EI+H+  +   L +     +      ++ D V +G +VV  A G A        ++N+Q +D TCP V+KV     +  + DY  ++ G   HEE + TA  A +++
Sbjct:   25 VLLAEPRGYCAGVDRAVETVERALEKH-GPPVYVRHEIVHNRHVVDTLAKAGAVFV------EETDQVPEGAIVVFSAHGVAPTVYAAAAERNLQTIDATCPLVTKVHNEARRFARNDYDILLIGHEGHEEVVGTAGEAPEHV 160          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_MYCPA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mycobacterium paratuberculosis GN=ispH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 42/143 (29.37%), Postives = 71/143 (49.65%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYI 525
            V LAE  G+C GV+RAV+    A ++     +++  EI+H+  +   LE+     +      ++ D V +G +VV  A G A        ++N+  +D TCP V+KV     +  + DY  ++ G   HEE + TA  A  ++
Sbjct:   25 VLLAEPRGYCAGVDRAVETVERALEKH-GPPVYVRHEIVHNRHVVSTLEKAGAVFV------EETDEVPEGAIVVFSAHGVAPTVHAAAAERNLHTIDATCPLVTKVHNEARRFARNDYDILLIGHEGHEEVVGTAGEAPDHV 160          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_KOSOT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=ispH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 43/144 (29.86%), Postives = 73/144 (50.69%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYII 528
            + LAE+ GFC+GV RAV+      K+  D ++    +I+H+  + K+L++M +K+ P +     F    +  V ++ A GA+ +    L  +   +VD TCP V  V++  +  +K  Y  +I GK  H E  A       Y+I
Sbjct:    3 IVLAESLGFCYGVNRAVEATKRLLKEKRDARV--IGDIVHNEIVMKKLKDMGLKVYP-DLSSIDFSDTAENSVAIIRAHGASPDVEDFLKRRFGYVVDLTCPIVYNVFSLAKDLEKKGYFIVIFGKKDHAEVKALCGRLNDYLI 143          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_CLOPS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium perfringens (strain SM101 / Type A) GN=ispH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 43/133 (32.33%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETI 495
            V LA+  GFC+GV+RAV  A + +K+F  +KI+    ++H+  +   LE+ ++  I + +       +NKGDVV++ + G     +  L DK + + + TCP V+ +   V+K  +  Y  II G  +H E I
Sbjct:    5 VILAKNAGFCFGVKRAVDEAIKYQKEF-GKKIYTLGPLIHNNDVVNYLEDNDIFAIELSDTNS----LNKGDVVLIRSHGVKESVIKDLTDKGLIVKNATCPYVTNIQLKVKKCYEQGYKIIIVGDENHPEVI 132          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_CLOP1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=ispH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 43/133 (32.33%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETI 495
            V LA+  GFC+GV+RAV  A + +K+F  +KI+    ++H+  +   LE+ ++  I + +     D + KGDVV++ + G     +  L DK + + + TCP V+ +   V+K  +  Y  II G  +H E I
Sbjct:    5 VILAKNAGFCFGVKRAVDEAIKYQKEF-GKKIYTLGPLIHNNDVVNYLEDNDIFAIELSDA----DSLKKGDVVLIRSHGVKESVIKDLTDKGLIVKNATCPYVTNIQLKVKKCYEQGYKIIIVGDENHPEVI 132          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_ALKOO (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Alkaliphilus oremlandii (strain OhILAs) GN=ispH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 38/133 (28.57%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETI 495
            V +A+  GFC+GVE+A+  A++  +    + I+    ++H+  +   LEE  +K++             K  VV++ + G   +     ++K + +VD TCP V K+   VE+++K  Y  +I G  SH E I
Sbjct:    3 VVVADHSGFCFGVEKAIDTAFKELEYKDSKDIYTLGPLIHNQQVISHLEENGIKVVSDLNS-------GKDGVVIIRSHGVPKDVYKDASEKKIDLVDATCPFVRKIQNIVEEYQKKGYHIVIIGDPSHPEVI 128          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_RHOE4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 43/147 (29.25%), Postives = 76/147 (51.70%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKD 537
            V LAE  G+C GV+RAV+   +A ++     I++  EI+H+  + + LE+  V  +       + D V +G ++V  A G +     +  ++N++ +D TCP V+KV    ++  + DY  ++ G   HEE   TA  A  ++   D
Sbjct:   28 VLLAEPRGYCAGVDRAVETVEKALEKH-GAPIYVRKEIVHNRHVVETLEDQGVIFVD------ETDEVPEGSLLVFSAHGVSPAVHDSAAERNLRTIDATCPLVTKVHQEAKRFARDDYDILLIGHEGHEEVEGTAGEAPDHVTIVD 167          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_NAUPA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 45/154 (29.22%), Postives = 77/154 (50.00%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSP-SINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFA--GKYIIXKDMKEV 549
            ++ A++YGFC+GV+RAV+IA E++             ++H+P  I +  +   VK +   E     D+      V++   G   +++  L +KNV+I+D TCP V K    VE+  K  Y  +I G  +H E     S++   +  +  D KE+
Sbjct:    3 IEKAKSYGFCFGVKRAVEIAEESQNAVT------LGPLIHNPLEIERLAKNYNVKYVETIE-----DIDENVKRVIVRTHGIPKDKLQNLKEKNVEIIDATCPFVKKPQEIVEEMSKQGYDIVIFGDKNHPEIQGVMSYSVHNRVYVVLDPKEL 145          
The following BLAST results are available for this feature:
BLAST of EY728325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
ISPH1_MYCTU2.425e-1229.374-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH1_MYCBO2.425e-1229.374-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_MYCUA7.057e-1229.374-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_MYCPA9.217e-1229.374-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_KOSOT2.053e-1129.864-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CLOPS2.053e-1132.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CLOP12.053e-1132.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ALKOO2.053e-1128.574-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_RHOE43.502e-1129.254-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NAUPA3.502e-1129.224-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-C09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728325 ID=EY728325; Name=EY728325; organism=Citrus sinensis; type=EST; length=784bp
CCACGCGTCCGAGAGCTCATGAATCAACAGTACGCAAGTGATATTATAAA
GAAATTGAAGGAGAATGGATACGAGTATACGTGGGGAAATGTTACGGTGA
AGCTGGCCGAAGCATATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGCAG
ATTGCTTATGAAGCAAGAAAACAGTTTCCCGATGAGAAGATCTGGATTAC
CAGTGAAATCCTTCACAGTCCATCTATCAACAAGCGGTTGGAGGAGATGG
AAGTTAAAATTATACCTGTTGAGGAAGGAAAGAAGCAATTTGATGTGGTA
AATAAGGGTGATGTTGTGGTTTTGCCTGCATTTGGGGCTGCAGTTGAAGA
AATGGTGACTCTGAATGACAAGAATGTACAGATCGTTGATACAACTTGCC
CTTGAGTGTCGAAGGTCTGGACTACTGTTGAGAAGCACAAGAAGGGAGAC
TATACTTCAATTATTCACGGTAAATATTCTCATGAGGAAACTATAGCAAC
TGCATCTTTTGCAGGAAAGTATATCATANTCAAGGATATGAAAGAGGTAT
GTTCGGAAGGTGGATTATATTATATTTTCTGGAGAATCTGTANAAGCATA
TTAGGAGATATTCATTAGAATGTTTTTTTCTTTTCAATTGTTATTATTTA
ATCCAGGCTGAGTACGTGTGTGATTACATTCTGGGGGGTGAACTTTATGG
ATCTACCCTTACAAAAGAAGCCTCCTTGAGGAATTCCAGAAACCCGTTCA
AAAGGGTTGATCCAGATGTTGACCCGGCACAGTT
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