EY728325

Overview
NameEY728325
Unique NameEY728325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_MYCSS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mycobacterium sp. (strain MCS) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 43/143 (30.07%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYI 525
            V LAE  G+C GV+RAV+    A ++     +++  EI+H+  +   L +     +      +Q D V +G +VV  A G A    V    +N++ +D TCP V+KV    ++  + DY  ++ G   HEE + TA  A  ++
Sbjct:   25 VLLAEPRGYCAGVDRAVETVERALEKH-GAPVYVRHEIVHNRYVVDTLAKAGAVFV------EQTDEVPEGAIVVFSAHGVAPTVHVEAAARNLKTIDATCPLVTKVHNEAKRFARDDYDILLVGHEGHEEVVGTAGEAPDHV 160          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_MYCSK (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mycobacterium sp. (strain KMS) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 43/143 (30.07%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYI 525
            V LAE  G+C GV+RAV+    A ++     +++  EI+H+  +   L +     +      +Q D V +G +VV  A G A    V    +N++ +D TCP V+KV    ++  + DY  ++ G   HEE + TA  A  ++
Sbjct:   25 VLLAEPRGYCAGVDRAVETVERALEKH-GAPVYVRHEIVHNRYVVDTLAKAGAVFV------EQTDEVPEGAIVVFSAHGVAPTVHVEAAARNLKTIDATCPLVTKVHNEAKRFARDDYDILLVGHEGHEEVVGTAGEAPDHV 160          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_MYCSJ (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mycobacterium sp. (strain JLS) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 43/143 (30.07%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYI 525
            V LAE  G+C GV+RAV+    A ++     +++  EI+H+  +   L +     +      +Q D V +G +VV  A G A    V    +N++ +D TCP V+KV    ++  + DY  ++ G   HEE + TA  A  ++
Sbjct:   25 VLLAEPRGYCAGVDRAVETVERALEKH-GAPVYVRHEIVHNRYVVDTLAKAGAVFV------EQTDEVPEGAIVVFSAHGVAPTVHVEAAARNLKTIDATCPLVTKVHNEAKRFARDDYDILLVGHEGHEEVVGTAGEAPDHV 160          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_MYCGI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mycobacterium gilvum (strain PYR-GCK) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 44/143 (30.77%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYI 525
            V LAE  G+C GV+RAV+    A ++     I++  EI+H+  +   L +     +      +Q D V +G +VV  A G A    V    +N++ +D TCP V+KV    ++  + DY  ++ G   HEE + TA  A  ++
Sbjct:   25 VLLAEPRGYCAGVDRAVETVERALEKH-GAPIYVRHEIVHNRYVVDTLAKAGAIFV------EQTDEVPEGAIVVFSAHGVAPTVHVEAAARNLKTIDATCPLVTKVHNEAKRFARDDYDILLVGHEGHEEVVGTAGEAPDHV 160          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_CLOPE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium perfringens GN=ispH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETI 495
            V LA+  GFC+GV+RAV  A + +K+F  +KI+    ++H+  +   LE+  +  I + +     D + KGDVV++ + G     +  L DK + + + TCP V+ +   V+K  +  Y  II G  +H E I
Sbjct:    5 VILAKNAGFCFGVKRAVDEAIKYQKEF-GKKIYTLGPLIHNNDVVNYLEDNNIFAIELSDA----DSLKKGDVVLIRSHGVKESVIKDLTDKGLIVKNATCPYVTNIQLKVKKCYEQGYKIIIVGDKNHPEVI 132          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_HELPY (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Helicobacter pylori GN=ispH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.574e-11
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEE-MEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFA 513
            +K+A+ YGFC+GV+RA+QIA + +         I   ++H+     RLE+   VKI   EE  K+   + K   V++   G   +++  L +K V+I D TCP V K    VE   K  Y  ++ G  +H E     S+A
Sbjct:    3 IKMAKDYGFCFGVKRAIQIAEKNQNSL------IFGSLIHNAKEINRLEKNFNVKI---EEDPKK---IPKNKSVIIRTHGIPKQDLEYLKNKGVKITDATCPYVIKPQQIVESMSKEGYQIVLFGDINHPEVKGVISYA 130          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_HELPS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Helicobacter pylori (strain Shi470) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.574e-11
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEE-MEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFA 513
            +K+A+ YGFC+GV+RA+QIA + +         I   ++H+     RLE+   VKI   EE  K+   + K   V++   G   +++  L +K V+I D TCP V K    VE   K  Y  ++ G  +H E     S+A
Sbjct:    3 IKMAKDYGFCFGVKRAIQIAEKNQNSL------IFGSLIHNAKEINRLEKNFNVKI---EEDPKK---IPKNKSVIIRTHGIPKQDLEYLKNKGVKITDATCPYVIKPQQIVESMSKEGYQIVLFGDINHPEVKGVISYA 130          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_HELPJ (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Helicobacter pylori J99 GN=ispH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.574e-11
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEE-MEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFA 513
            +K+A+ YGFC+GV+RA+QIA + +         I   ++H+     RLE+   VKI   EE  K+   + K   V++   G   +++  L +K V+I D TCP V K    VE   K  Y  ++ G  +H E     S+A
Sbjct:    3 IKMAKDYGFCFGVKRAIQIAEKNQNSL------IFGSLIHNAKEINRLEKNFNVKI---EEDPKK---IPKNKSVIIRTHGIPKQDLEYLKNKGVKITDATCPYVIKPQQIVESMSKEGYQIVLFGDINHPEVKGVISYA 130          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_HELPH (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Helicobacter pylori (strain HPAG1) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.574e-11
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEE-MEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFA 513
            +K+A+ YGFC+GV+RA+QIA + +         I   ++H+     RLE+   VKI   EE  K+   + K   V++   G   +++  L +K V+I D TCP V K    VE   K  Y  ++ G  +H E     S+A
Sbjct:    3 IKMAKDYGFCFGVKRAIQIAEKNQNSL------IFGSLIHNAKEINRLEKNFNVKI---EEDPKK---IPKNKSVIIRTHGIPKQDLEYLKNKGVKITDATCPYVIKPQQIVESMSKEGYQIVLFGDINHPEVKGVISYA 130          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_HELP2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Helicobacter pylori (strain P12) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.574e-11
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1
Query:   97 VKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEE-MEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFA 513
            +K+A+ YGFC+GV+RA+QIA + +         I   ++H+     RLE+   VKI   EE  K+   + K   V++   G   +++  L +K V+I D TCP V K    VE   K  Y  ++ G  +H E     S+A
Sbjct:    3 IKMAKDYGFCFGVKRAIQIAEKNQNSL------IFGSLIHNAKEINRLEKNFNVKI---EEDPKK---IPKNKSVIIRTHGIPKQDLEYLKNKGVKITDATCPYVIKPQQIVESMSKEGYQIVLFGDINHPEVKGVISYA 130          
The following BLAST results are available for this feature:
BLAST of EY728325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
ISPH_MYCSS3.502e-1130.074-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_MYCSK3.502e-1130.074-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_MYCSJ3.502e-1130.074-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_MYCGI3.502e-1130.774-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CLOPE3.502e-1132.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_HELPY4.574e-1132.864-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_HELPS4.574e-1132.864-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_HELPJ4.574e-1132.864-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_HELPH4.574e-1132.864-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_HELP24.574e-1132.864-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-C09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728325 ID=EY728325; Name=EY728325; organism=Citrus sinensis; type=EST; length=784bp
CCACGCGTCCGAGAGCTCATGAATCAACAGTACGCAAGTGATATTATAAA
GAAATTGAAGGAGAATGGATACGAGTATACGTGGGGAAATGTTACGGTGA
AGCTGGCCGAAGCATATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGCAG
ATTGCTTATGAAGCAAGAAAACAGTTTCCCGATGAGAAGATCTGGATTAC
CAGTGAAATCCTTCACAGTCCATCTATCAACAAGCGGTTGGAGGAGATGG
AAGTTAAAATTATACCTGTTGAGGAAGGAAAGAAGCAATTTGATGTGGTA
AATAAGGGTGATGTTGTGGTTTTGCCTGCATTTGGGGCTGCAGTTGAAGA
AATGGTGACTCTGAATGACAAGAATGTACAGATCGTTGATACAACTTGCC
CTTGAGTGTCGAAGGTCTGGACTACTGTTGAGAAGCACAAGAAGGGAGAC
TATACTTCAATTATTCACGGTAAATATTCTCATGAGGAAACTATAGCAAC
TGCATCTTTTGCAGGAAAGTATATCATANTCAAGGATATGAAAGAGGTAT
GTTCGGAAGGTGGATTATATTATATTTTCTGGAGAATCTGTANAAGCATA
TTAGGAGATATTCATTAGAATGTTTTTTTCTTTTCAATTGTTATTATTTA
ATCCAGGCTGAGTACGTGTGTGATTACATTCTGGGGGGTGAACTTTATGG
ATCTACCCTTACAAAAGAAGCCTCCTTGAGGAATTCCAGAAACCCGTTCA
AAAGGGTTGATCCAGATGTTGACCCGGCACAGTT
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