EY728325

Overview
NameEY728325
Unique NameEY728325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_TREDE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Treponema denticola GN=ispH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.974e-11
Identity = 46/155 (29.68%), Postives = 77/155 (49.68%), Query Frame = 1 
Query:   91 VTVKLAEAYGFCWGVERAVQIAYEARKQFPDEK--IWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFA-GKYIIXKDMKE 546
            + VK AE  G+C GV RAV    +  K+  + K  ++    ++H+PS   RL++M V+ I  E   +  D   K  V+V+ A G    +   L     +++D TC  V       +KH +  +  I+ G  +H E I+ A +A GK +I ++ +E
Sbjct:    1 MVVKRAEVLGYCSGVRRAVDTVLKLAKENTENKSGLYTFGPLIHNPSTMLRLKQMGVRTIDTENFTEDEDY--KDSVIVIRAHGIPPSKKSELEKSGAKVIDATCSRVKASQALAKKHSEEAFV-ILAGDKNHGELISIAGYAEGKCLIVQNAEE 152
The following BLAST results are available for this feature:
BLAST of EY728325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
ISPH_TREDE5.974e-1129.684-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-C09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728325 ID=EY728325; Name=EY728325; organism=Citrus sinensis; type=EST; length=784bp
CCACGCGTCCGAGAGCTCATGAATCAACAGTACGCAAGTGATATTATAAA
GAAATTGAAGGAGAATGGATACGAGTATACGTGGGGAAATGTTACGGTGA
AGCTGGCCGAAGCATATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGCAG
ATTGCTTATGAAGCAAGAAAACAGTTTCCCGATGAGAAGATCTGGATTAC
CAGTGAAATCCTTCACAGTCCATCTATCAACAAGCGGTTGGAGGAGATGG
AAGTTAAAATTATACCTGTTGAGGAAGGAAAGAAGCAATTTGATGTGGTA
AATAAGGGTGATGTTGTGGTTTTGCCTGCATTTGGGGCTGCAGTTGAAGA
AATGGTGACTCTGAATGACAAGAATGTACAGATCGTTGATACAACTTGCC
CTTGAGTGTCGAAGGTCTGGACTACTGTTGAGAAGCACAAGAAGGGAGAC
TATACTTCAATTATTCACGGTAAATATTCTCATGAGGAAACTATAGCAAC
TGCATCTTTTGCAGGAAAGTATATCATANTCAAGGATATGAAAGAGGTAT
GTTCGGAAGGTGGATTATATTATATTTTCTGGAGAATCTGTANAAGCATA
TTAGGAGATATTCATTAGAATGTTTTTTTCTTTTCAATTGTTATTATTTA
ATCCAGGCTGAGTACGTGTGTGATTACATTCTGGGGGGTGAACTTTATGG
ATCTACCCTTACAAAAGAAGCCTCCTTGAGGAATTCCAGAAACCCGTTCA
AAAGGGTTGATCCAGATGTTGACCCGGCACAGTT
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