EY728321

Overview
NameEY728321
Unique NameEY728321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728321 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSI (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. indica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.807e-22
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 3
Query:  507 GVNARKKLRLTKEQSALLEESFKQHSTPHPKQKQALARQLNLRPRQVEVWFQNXRAKTNLKQ 692
            G   RKKL+LTKEQS LLE+SF+ H+     QK  LARQL L+PRQVEVWFQN RA+T LKQ
Sbjct:  110 GGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQ 171          

HSP 2 Score: 44.669 bits (104), Expect = 2.807e-22
Identity = 17/22 (77.27%), Postives = 22/22 (100.00%), Query Frame = 2
Query:  692 TEVDCEFLKKCCETLTDENRRL 757
            TEVDCEFLK+CCE+LT+EN++L
Sbjct:  172 TEVDCEFLKRCCESLTEENKQL 193          
BLAST of EY728321 vs. ExPASy Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.158e-18
Identity = 42/66 (63.64%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  492 DEDEDGVNARKKLRLTKEQSALLEESFKQHSTPHPKQKQALARQLNLRPRQVEVWFQNXRAKTNLK 689
            D+   G   RKKLRLTKEQS LLEESF Q+ T  PKQK+ LA  L L  RQVEVWFQN RA++ LK
Sbjct:   59 DDSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLK 124          

HSP 2 Score: 35.039 bits (79), Expect = 2.158e-18
Identity = 21/53 (39.62%), Postives = 29/53 (54.72%), Query Frame = 2
Query:  692 TEVDCEFLKKCCETLTDENRRLPRNYKTPNSEPTHPL*CISRSYLTMCLSCDR 850
            TE++CE+LK+   +L ++NRRL         E    L   S S LTMC  C+R
Sbjct:  126 TEMECEYLKRWFGSLKEQNRRLQIEV-----EELRALKPSSTSALTMCPRCER 173          
BLAST of EY728321 vs. ExPASy Swiss-Prot
Match: HOX26_ORYSJ (Putative homeobox-leucine zipper protein HOX26 OS=Oryza sativa subsp. japonica GN=HOX26 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.723e-13
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  498 DEDGVNARKKLRLTKEQSALLEESFKQHSTPHPKQKQALARQLNLRPRQVEVWFQNXRAKTNLKQ 692
            DE+G + RKKLRLT EQ+ LLE+SF+ H+     +KQ LA +L L  RQVEVWFQN RA+T LKQ
Sbjct:  110 DEEGAS-RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQ 173          
The following BLAST results are available for this feature:
BLAST of EY728321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
HOX18_ORYSI2.807e-2266.13Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
ATHBX_ARATH2.158e-1863.64Homeobox-leucine zipper protein ATHB-X OS=Arabidop... [more]
HOX26_ORYSJ9.723e-1360.00Putative homeobox-leucine zipper protein HOX26 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728321 ID=EY728321; Name=EY728321; organism=Citrus sinensis; type=EST; length=864bp
CCACGCGTCCGTATTTTTCTCTCCTTCGCTTCAGAAGTCCCGAGTGTTTC
TCAAGACTCTCGAATCTCATATCTTAAATGGGTTTTGATGATGGGTGTAA
CACAGGCCTCGTGCTAGGGTTAGGTTTCGCATCAGCCATAGAAACTACTC
CAACAAATAAGGCGAACAATATAAATATTGTCAACCACCAGCAGCTGCAG
CTGCCTAAGGGTACATGTTTTGAGCCATCGCTTAGTCTGGGCCTTCCTGG
TGAGATTTACCCTGAGACTGCTACTGCTACTACCAAAAAGAATAGTAATA
GTATTGATGTGAACAAAGGTTACGAGGAATCCGCAGCAGCAGGCGTCGCC
GAATATCAAATACTAAATCGTCAGGCTTCTCCTCACAGTGCTGTTTCTAA
TTCCTTCTCTAGCGGTAGAGTCGTCAAGAGGGAGAGAGACCTTAGCAGTG
AAGAGATAGAGGTTGAAAAAGTTATTTCATCAAGAGCCAGTGATGAAGAT
GAAGACGGTGTTAATGCCAGAAAGAAACTTAGACTCACCAAAGAACAGTC
TGCTCTTCTTGAGGAAAGCTTCAAACAGCATAGCACTCCTCATCCTAAGC
AAAAGCAAGCTTTGGCAAGGCAACTAAACCTACGACCAAGACAAGTTGAA
GTATGGTTCCAGAATANGAGAGCCAAGACCAACCTTAAGCAACAGAAGTG
GACTGTGAATTCTTGAAGAAATGCTGTGAAACCCTAACTGATGAAAACAG
AAGGCTGCCAAGGAACTACAAGACCCCAAACTCTGAACCTACTCACCCTC
TTTAATGCATTTCCCGCAGCTACCTGACAATGTGCCTTTCTTGTGACCGA
TCGGCGGCGGCCTC
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