EY728304

Overview
NameEY728304
Unique NameEY728304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728304 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.771e-15
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVD 291
            GRLFQVEYA +A+K  G T+IGV+ K+ V +  +K++   LL+ +SV  +  I  ++G   +G+IADARTLV+ AR E    RF YG  M V+
Sbjct:   19 GRLFQVEYAIEAIKL-GSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVE 110          
BLAST of EY728304 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.313e-15
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVD 291
            GRLFQVEYA +A+K  G T+IG++ K+ V +  +K++   LL+ +SV  +  I +++G   +G+IADARTLV+ AR E    RF YG  M V+
Sbjct:   19 GRLFQVEYAIEAIKL-GSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVE 110          
BLAST of EY728304 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQV YA +AVK  G T++GV+ KD V +  +K++  KL++ +S   +F I  ++    +G+IADAR LV +AR EA  +R  YG  +P+ VL K
Sbjct:   21 GRLFQVNYAREAVKR-GATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVK 116          
BLAST of EY728304 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQV YA +AVK  G T++GV+ KD V +  +K++  KL++ +S   +F I  ++    +G+IADAR LV +AR EA  +R  YG  +P+ VL K
Sbjct:   21 GRLFQVNYAREAVKR-GATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVK 116          
BLAST of EY728304 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.154e-15
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQV YA +AVK  G T++GV+ K+ V +  +K++  KL++ +S   +F I  ++    +G+IADAR LV +AR EA  +R  YG  +P+ VL K
Sbjct:   21 GRLFQVNYAREAVKR-GATAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVK 116          
BLAST of EY728304 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.731e-15
Identity = 40/97 (41.24%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRL+QVEYA +AVK  G T++G++  D V ++  K+V  KLL+ +S+  +F I +++G+ ++G++ DAR LV +AR E    R  Y   + V+ LAK
Sbjct:   20 GRLYQVEYAREAVKR-GTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAK 115          
BLAST of EY728304 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.499e-14
Identity = 41/97 (42.27%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQVEYA +AVK  G TS+GV+ K+ + +V  K+   KL++  S+  +F I +++G   +G++ADAR ++++AR EA   R  Y   + V+ LAK
Sbjct:   20 GRLFQVEYAREAVKR-GTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAK 115          
BLAST of EY728304 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.499e-14
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLA 300
            GR+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G++ADAR+L   AR EA+ FR  +GY +P+  LA
Sbjct:   19 GRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLA 113          
BLAST of EY728304 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.499e-14
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLA 300
            GR+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G++ADAR+L   AR EA+ FR  +GY +P+  LA
Sbjct:   19 GRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLA 113          
BLAST of EY728304 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.499e-14
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLA 300
            GR+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G++ADAR+L   AR EA+ FR  +GY +P+  LA
Sbjct:   19 GRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLA 113          
The following BLAST results are available for this feature:
BLAST of EY728304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PSA5A_ARATH1.771e-1546.24Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSA5_SOYBN2.313e-1545.16Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSMA_THEK13.946e-1544.33Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_PYRKO3.946e-1544.33Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSMA_THEON5.154e-1543.30Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_METB66.731e-1541.24Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSMA_METTH1.499e-1442.27Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSA3_RAT1.499e-1444.79Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_MOUSE1.499e-1444.79Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSA3_HUMAN1.499e-1444.79Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-A10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728304 ID=EY728304; Name=EY728304; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGGGTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGT
TAAGGCTGCTGGGGTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCT
GTGTTGTGACTCAGAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGT
GTCACACATCTTTTCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGG
AATGATAGCTGATGCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCG
CTGAGTTTCGCTTCAAATATGGATATGAAATGCCTGTGGATGTGTTAGCC
AAATGGTAAGTTTTCATATCCTTTTAAGTTGAATTCTAGTTTGCTTGTTT
AGTATTCGATATTTTCTGCAAATTGTTGACCGAACATTGCCTTTTTCCTT
ACTCATTTTTTGTCACTTTACTGCTTAAGTTTTGGTTAAATGTTGCAGTA
CTACTATCTGAAAAACAGTTATGTTAATTTCCTTTCATGTACAGGATTGC
AGACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTG
TAGTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTT
AGGTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGG
ATTGAAGGAGCAAGAGGCAATTTATTTCTTGGAGAAGAAGATGAAGAATG
ATCCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGGAATTTCCACCCTG
CATCAGTCCTGCAAGAGGATTTTAGGGCGAATGAAATTGAGGTTGGCGTG
GTGACCACGAAAATCCAAATTCAAAATTTGGTCCACGAGGAAGAATCAAG
ACCCTTGACTGCATACGGCACCAAATTAGAGGTGGTCTCCCCCCACCTTA
ATGCTGAAACCAAACT
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