EY728236

Overview
NameEY728236
Unique NameEY728236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: ABCF4_DICDI (ABC transporter F family member 4 OS=Dictyostelium discoideum GN=abcF4 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.334e-20
Identity = 62/193 (32.12%), Postives = 103/193 (53.37%), Query Frame = 3
Query:   27 VVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKGTVITVSHDRYFVKQIVIE*WRLK 599
            ++  K++ FGYE R  +F + ++ I+   K A++G NG GKSTL+KL+ G L +  G   +     +    F Q+  + LD   T +E       +  +  I+  LGR      +   K++ LSGG+K+R+   +       +L+LDEPTNHLDI   E L E I+ + G V+ +SH+++ +  I  + W +K
Sbjct:  922 LLVFKDVCFGYEGRPTMFKKLDIGIDMDSKIALVGMNGVGKSTLMKLMNGDLHETTG--YIERSRKMRVARFSQHFVDQLDTTMTPIEYFQSKFNNPPVQQIRNHLGRFGICNSLPLHKITTLSGGQKSRVILAELAWAEPHILLLDEPTNHLDIDAIEALAEGINAFTGGVVLISHNQHLINLIAEQIWVVK 1112          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: YBP8_SCHPO (Uncharacterized ABC transporter ATP-binding protein C16H5.08c OS=Schizosaccharomyces pombe GN=SPBC16H5.08c PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.880e-20
Identity = 63/198 (31.82%), Postives = 101/198 (51.01%), Query Frame = 3
Query:   27 VVTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKGTVITVSHDRYFVKQIVIE*WRLK 599
            ++   ++ F Y+   D  L+   +  I+   + AI+G NG GKSTLL LI GL  P  G V       +  Y  Q+ A+ L  DK+ LE + +  +    +  +   + +LG+          ++  LS G K+R+ F    ++   +L+LDEPTNHLDI   + L +AI+ + G V+ VSHD   + Q+  E W +K
Sbjct:  387 IIAFNDVAFSYDGNLDHALYRDLSFGIDMDSRVAIVGKNGTGKSTLLNLITGLLIPIEGNVSRYSGLKMAKY-SQHSADQLPYDKSPLEYIMDTYKPKFPERELQQWRSVLGKFGLSGLHQTSEIRTLSDGLKSRVVFAALALEQPHILLLDEPTNHLDITSIDALAKAINVWTGGVVLVSHDFRLIGQVSKELWEVK 583          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: YB89_SCHPO (Uncharacterized ABC transporter ATP-binding protein C29A3.09c OS=Schizosaccharomyces pombe GN=SPBC29A3.09c PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.618e-20
Identity = 55/175 (31.43%), Postives = 94/175 (53.71%), Query Frame = 3
Query:   72 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKGTVITVSHDRYFVKQIVIE*WR 593
            +    ++ ++   +  ++GPNG GKST+LKL++    P  G  ++  H  L   YF Q+  + LDL+   L  +A+       ++ +  LG       +  +K+  LSGG+K+R+AF    ++   +L+LDEPTNHLD+   + L  A+  ++G VI VSHD  F+ +     W+
Sbjct:  533 ILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHPTSG--IVSRHPRLRIAYFAQHHVDTLDLNLNALSFLAKTFPGKGEEEYRRHLGAFGVSGPLALQKMITLSGGQKSRVAFACLGLQNPHILILDEPTNHLDMESMDALTRAVKRFQGGVILVSHDVDFLDKTCTSIWQ 705          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: AB4F_ARATH (ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.926e-19
Identity = 59/186 (31.72%), Postives = 99/186 (53.23%), Query Frame = 3
Query:   45 LEFGYEDRLLFNRANLT--IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKGTVITVSHDRYFVKQIVIE 584
            + F Y +R  F  +N+   I+ G + AI+GPNG GKSTLL L+ G   P  GE+   +   +  Y  Q+  + L + +T ++ +     D     + + ++  LG+    +      ++ LSGG+KAR+ F    +    +L+LDEPTNHLD+   + L +A+ E+ G V+ VSHD   + ++  E
Sbjct:  501 VSFSYPNRPDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEMRRSQKLRIGRY-SQHFVDLLTMGETPVQYLLRLHPDQEGFSKQEAVRAKLGKFGLPSHNHLSPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCAE 685          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: ZNUC_RICBR (Zinc import ATP-binding protein znuC OS=Rickettsia bellii (strain RML369-C) GN=znuC PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.354e-17
Identity = 53/186 (28.49%), Postives = 101/186 (54.30%), Query Frame = 3
Query:   21 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKG----TVITVSHDRYFV 566
            + ++   N+   + ++L  N  + T+++   T +IGPNG GK+T+++L++GLEKP  GE+++ +  +   Y  Q    + DL  TV + +   A +   +DIK +    + +  + D+K+S LSGG+  ++     ++    L++LDEP   LD+  ++   + IS  +     TV  +SHD + V
Sbjct:    3 KPIIEFHNVSKKFGNKLPINNVSFTVKKNNITTLIGPNGAGKTTIVRLMLGLEKPTSGEIII-DPRLKIGYVPQKFNLSSDLPITVKKFLDLLAPNNLTNDIKEIHSFIDLER-LKDQKISTLSGGQFQKIVLASSLLSKPDLIILDEPLQSLDVTSQQEFYQLISLIRKKLDITVFMISHDLFTV 186          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: ZNUC_MARAV (Zinc import ATP-binding protein znuC OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=znuC PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.354e-17
Identity = 59/186 (31.72%), Postives = 96/186 (51.61%), Query Frame = 3
Query:   27 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAE--AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKGT----VITVSHDRYFV 566
            +V ++ +   ++DR + +R NLT+ RG+   IIGPNG GK+TL+K ++G+++   G++     +V P        + L L+ T+  +V          + D    L R    A +LD  V  LSGGEK RL   + + +   LLVLDEP   +DI  +  L + I + +      +I +SHD + V
Sbjct:    5 LVRLEQITVAFDDRPVVDRVNLTVSRGDIVTIIGPNGAGKTTLIKTVLGIQRATSGQL-----SVAPGLVIGYVPQHLTLEPTLPLSVRRFMLLSGRTLADCTAALERTGV-AHLLDASVHHLSGGEKQRLLLARALARKPDLLVLDEPAQGVDINGQATLYDLIRQLRDELHCGIIMISHDLHLV 184          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: POTA_MANSM (Spermidine/putrescine import ATP-binding protein potA OS=Mannheimia succiniciproducens (strain MBEL55E) GN=potA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.074e-17
Identity = 59/197 (29.95%), Postives = 104/197 (52.79%), Query Frame = 3
Query:   21 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---------GEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI--DDIKGLL---GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKG----TVITVSHDR 557
            + ++ +++L+  Y +  + +  NLTI  GE   I+GP+GCGK+T+L+LI G E+  GG+++L          EH  +   F   Q+ AL    T+ E VA      ++  ++IK  +    R     +M DRK + LSGG++ R+A  + +V    +L+LDE  + LD   ++ ++  +   +     T I V+HD+
Sbjct:    8 KPIIELRSLKKSYNENTIIDNFNLTINNGEFLTILGPSGCGKTTVLRLIAGFEEANGGQIILDGEDVTDLPAEHRPVNTVF---QSYALFPHMTIFENVAFGLRMQKVPNEEIKPRVLEALRMVQLEEMADRKPTQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFIFVTHDQ 201          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: YJQ1_SCHPO (Uncharacterized ABC transporter ATP-binding protein C825.01 OS=Schizosaccharomyces pombe GN=SPCC825.01 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.015e-17
Identity = 51/188 (27.13%), Postives = 98/188 (52.13%), Query Frame = 3
Query:   30 VTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKGTVITVSHDRYFVKQIVIE*W 590
            +  +++ F Y     +F++ N  ++   + A++GPNG GK+TL+KLI+   +P  G V+   H +    F Q+  + LD+  + +E +     +    +++ ++GR           +  LS G++ R+ F    +    +L+LDEPTN LDI   + L +A++ + G V+ ++HD   + Q+  E W
Sbjct:  594 IKFQDVSFNYPGGPTIFSKLNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQPSTGSVVR-HHGLRLALFNQHMGDQLDMRLSAVEWLRTKFGNKPEGEMRRIVGRYGLTGKSQVIPMGQLSDGQRRRVLFAFLGMTQPHILLLDEPTNALDIDTIDALADALNNFDGGVVFITHDFRLIDQVAEEIW 780          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: ABCF3_ENCCU (Probable ATP-binding cassette sub-family F member 3 homolog OS=Encephalitozoon cuniculi GN=ECU05_1190 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.015e-17
Identity = 54/181 (29.83%), Postives = 94/181 (51.93%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKGTVITVSHDRYFV 566
            +++   N+ F Y    +    ++ I    +  ++G NG GKST LKL+ G  +   G ++    ++   YF Q+  + L +++ VL+ + ++   +  ++ +  L       D  ++ +  LSGG+K+RL F         LLVLDEPTNHLD+   + L EA+  + G V+ VSHD  F+
Sbjct:  349 ALIEFVNVVFSYGCGKVLGGLSMKINSDSRIVVVGANGQGKSTFLKLLAGKLEATEGSIIRAP-SLRVGYFAQHHIDHLRVNENVLDFMMKS---YTQEEARRALASFGLSVD--NQCIGTLSGGQKSRLGFAIINGLSPNLLVLDEPTNHLDMESIDALAEALGRFNGAVVCVSHDLSFI 523          

HSP 2 Score: 79.7221 bits (195), Expect = 2.436e-14
Identity = 64/188 (34.04%), Postives = 90/188 (47.87%), Query Frame = 3
Query:   72 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLI----MGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKGTVITVSHDRYFVK---QIVIE*WRLKAAIYR 614
            +   A LTI RG K  ++G NG GK+TLLK I     G+  PRG  + + + +++                     V E  ED+   +   +L    F  DM  + +  LSGG + R    K +     LL+LDEPTN+LDI     LE  I E K TVI VSHDR F+    ++++    LK  +YR
Sbjct:  104 IIREAPLTIVRGRKYGLVGRNGIGKTTLLKAIRKRRFGI--PRGMRIYMIKQDLI---------------------VDETVEDFAGAEAGRILNGLGFTKDMAVKNMRDLSGGWRMRAHLAKAINADPDLLLLDEPTNYLDINALSWLEGKIKELK-TVIIVSHDRNFLNNTTEMILHLNDLKIDVYR 267          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: SSUB1_RHILO (Aliphatic sulfonates import ATP-binding protein ssuB 1 OS=Rhizobium loti GN=ssuB1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.945e-17
Identity = 64/202 (31.68%), Postives = 103/202 (50.99%), Query Frame = 3
Query:    3 TRPR---SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE----HNVLPNYFEQ-------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPFKEMLEEAISEYKGTVITVSHD 554
            TRP     GR     K +E  + D+++ +  +L +  G+  A+IG +GCGKSTLL+L+ GL++P  G + LG     H+     F++       +  + +++  T +    +A +  R  DI G +G     AD  D   S+LSGG+K R+A  + +V    +L LDEP   LD    I  +++LE      K T + V+HD
Sbjct:   19 TRPAISVEGRRAFAFKGVEKRFGDKIVLDGIDLDVPAGQFVAVIGKSGCGKSTLLRLLAGLDRPTSGSLTLGAEEEGHSRTRFMFQEPRLLPWASVVKNVEIGLTGIAAGQDARQ--RALDILGEVG----LADRADEWPSVLSGGQKQRVALARALVGHPQILALDEPLGALDALTRIEMQQLLERIWLAQKFTAVLVTHD 214          
The following BLAST results are available for this feature:
BLAST of EY728236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ABCF4_DICDI1.334e-2032.12ABC transporter F family member 4 OS=Dictyostelium... [more]
YBP8_SCHPO3.880e-2031.82Uncharacterized ABC transporter ATP-binding protei... [more]
YB89_SCHPO6.618e-2031.43Uncharacterized ABC transporter ATP-binding protei... [more]
AB4F_ARATH1.926e-1931.72ABC transporter F family member 4 OS=Arabidopsis t... [more]
ZNUC_RICBR2.354e-1728.49Zinc import ATP-binding protein znuC OS=Rickettsia... [more]
ZNUC_MARAV2.354e-1731.72Zinc import ATP-binding protein znuC OS=Marinobact... [more]
POTA_MANSM3.074e-1729.95Spermidine/putrescine import ATP-binding protein p... [more]
YJQ1_SCHPO4.015e-1727.13Uncharacterized ABC transporter ATP-binding protei... [more]
ABCF3_ENCCU4.015e-1729.83Probable ATP-binding cassette sub-family F member ... [more]
SSUB1_RHILO8.945e-1731.68Aliphatic sulfonates import ATP-binding protein ss... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-C03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728236 ID=EY728236; Name=EY728236; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAGAAGTGGTAGATCTGTTGTAACAATTAAGAACCTGGAA
TTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCTCACAATTGA
AAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTGGTAAGAGTA
CTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGAGGTGAAGTT
CTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCAGAATCAGGC
TGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAGCAGAAGCTG
CAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGTCGTTGTAAT
TTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAGTGGTGGTGA
GAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCATCAACTCTTC
TAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTTCAAAGAGATG
CTCGAGGAGGCCATATCAGAGTACAAGGGCACAGTAATCACAGTTTCTCA
TGACCGATACTTCGTAAAGCAAATAGTAATAGAGTAGTGGAGGTTAAAGG
CAGCAATTTACAGGACTATGCTTGTGATTACAATTATTACCTAGAGAAAA
ACCTCCATGCTCGGGAAAGGGACCTTGAACGTGAGGCAGAGCTCCAAGAA
AAGGCTTCCAAAAATCAAGGCCAATCCNAGATGTCAAAGGCTGAGAAGGA
AGCTCGGAAGAAACAGAAATGCAGGCCTTTCAAGCAGCGAAACAAAATCA
AAAGGCTCGAAGATGGCAAAAATGGAAATGAAAGATAACCCGTATATATG
CGAAGGAAATCCATTGTACCTAATTTGCTGAGCAAATTCAGG
back to top