EY728236

Overview
NameEY728236
Unique NameEY728236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: UGPC_RHIME (sn-glycerol-3-phosphate import ATP-binding protein ugpC OS=Rhizobium meliloti GN=ugpC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 54/196 (27.55%), Postives = 98/196 (50.00%), Query Frame = 3
Query:   24 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE--------ALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADM---LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYK----GTVITVSHDR 557
            + +T+K++   Y  D       +L I  GE   ++GP+GCGKSTLL++I GLE    GE+ +G+  V  N  E ++ +        AL    TV + ++   ++     ++I+  + +     ++   LDRK   LSGG++ R+A  + +V+     + DEP ++LD   +  +   I   +     T + V+HD+
Sbjct:    2 ATITLKDVHKTYHGDIAAIRGVSLAIADGEFIVLVGPSGCGKSTLLRMIAGLESITSGEISIGDRVV--NGLEPSERDIAMVFQNYALYPHMTVRQNLSYGLKNRNTPKEEIERRIAKAAKSLEIEPFLDRKPRQLSGGQRQRVAMGRAIVREPAAFLFDEPLSNLDAKLRVQMRVEIKRLQRALGTTSVYVTHDQ 195          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: TROB_TREPA (Zinc transport system ATP-binding protein troB OS=Treponema pallidum GN=troB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 57/192 (29.69%), Postives = 87/192 (45.31%), Query Frame = 3
Query:   30 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-----GEHNVLPNYFEQNQAEALDLDKTVLETV---AEAAEDWRIDDIKGLLGRCNFKAD------MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKG---TVITVSHD 554
            V + +L   Y  + +    ++ I  G   AIIGPNG GKSTLLK IMGL     GEV +      +      Y  Q  A   D   TV + V   +  +  W +   K    R     +       LDR++S LSGG++ R+   + +V+ + L  +DEP   +D   ++ +   +   KG   T++ V HD
Sbjct:   11 VQVDDLTLAYRQKPVLWDVDVRIPEGVIEAIIGPNGAGKSTLLKAIMGLLPLASGEVRVFGRPFSKERRRVAYVPQRSAVDWDFPTTVFDVVLMGSYGSLGWILRPGKREKARAREAIEEVGMGAFLDRQISELSGGQQQRVFLARALVQDADLYFMDEPFQGVDAATEQAIVTLLKTLKGRGKTLLVVHHD 202          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: THIQ_PHOLL (Thiamine import ATP-binding protein thiQ OS=Photorhabdus luminescens subsp. laumondii GN=thiQ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 54/192 (28.12%), Postives = 98/192 (51.04%), Query Frame = 3
Query:   27 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN----------VLPNYFEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKE----MLEEAISEYKGTVITVSHD 554
            ++ ++NL + YE  ++  R +L I+ GE+ AI+GP+G GKSTLL LI G +    G + L   N          V   + E N    L +++ +   +         +   ++ ++ + + + D L R  + LSGG++ R A  + +V+   +L+LDEP + LD   +     +LE+   E + T++ VSH+
Sbjct:    1 MLKLENLTYRYEHLMM--RFDLHIQAGERIAILGPSGAGKSTLLNLIAGFQTAEKGSLWLNGENHTSTSPAQRPVSMLFQENNLFSHLTIEQNIGLGLHPGLRLNSTQKQTLQQIVSQVSLE-DCLPRLPAQLSGGQRQRAALARCLVRQQPILLLDEPFSALDPALRNEMLVLLEQVCHERQLTLLMVSHN 189          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: THIQ_ECO57 (Thiamine import ATP-binding protein thiQ OS=Escherichia coli O157:H7 GN=thiQ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 55/179 (30.73%), Postives = 88/179 (49.16%), Query Frame = 3
Query:   81 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG--EHNVLP-------NYFEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKE----MLEEAISEYKGTVITVSH 551
            R +LT+ERGE+ AI+GP+G GKSTLL LI G   P  G + +   +H   P         F++N    L    TV + +           A +  ++  I   +G  N  A    R    LSGG++ R+A  + +V+   +L+LDEP + LD   ++    ++  +  + K T++ VSH
Sbjct:   17 RFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQENN---LFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMA----RLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSH 188          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: TAP1_GORGO (Antigen peptide transporter 1 OS=Gorilla gorilla gorilla GN=TAP1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 58/210 (27.62%), Postives = 100/210 (47.62%), Query Frame = 3
Query:   27 VVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-------EHNVL----------PNYF----EQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPFKEMLEEAISEYKGTVITVSHDRYFVKQ 572
            +V  +++ F Y +R   L+      T+  GE TA++GPNG GKST+  L+  L +P GG++LL        EH  L          P  F    ++N A  L    T+ E  A A +      I GL    + +   +    S LSGG++  +A  + +++   +L+LD+ T+ LD    +  +++L E+   Y  +V+ ++     V+Q
Sbjct:  502 LVQFQDVSFAYPNRPDVLVLQGLTFTLHPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKCGAHSFISGLPQGYDTE---VGEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ 708          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: SSUB_ZYMMO (Aliphatic sulfonates import ATP-binding protein ssuB OS=Zymomonas mobilis GN=ssuB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 50/163 (30.67%), Postives = 84/163 (51.53%), Query Frame = 3
Query:   87 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG---EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPFKEMLEEAISEYKGTVITVSHD 554
            ++ I  G+  A++G +GCGKSTLL+LI  LE+P  G++L+       + P+     Q   L   ++VL+ V   A+D      +  L   N   D  +    +LSGG+  R++  + +     +L+LDEP   LD    +  ++++E    E K TV+ V+HD
Sbjct:   25 DIAIPEGQFVALVGESGCGKSTLLRLISHLERPTSGQLLIDGKERRKINPSVRYLFQEARLLPWRSVLDNVRLGAKDRDKKTARESLESVNL-LDKENEWPEILSGGQCQRVSLARALAGKPKILLLDEPLGALDALTRVQMQKLIESLWLEQKFTVLLVTHD 186          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: SSUB_BRAJA (Aliphatic sulfonates import ATP-binding protein ssuB OS=Bradyrhizobium japonicum GN=ssuB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 56/184 (30.43%), Postives = 85/184 (46.20%), Query Frame = 3
Query:   30 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ--NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPFKEMLEEAISEYKGTVITVSHD 554
            ++I+ L   + D  +    +L I  G+  AI+G +GCGKSTLL+LI GL+K   G + LG  +V P        +   L   + +         D    D      +   +   AD  D+  S+LSGG+K R+A  + +V    +L  DEP   LD    I  + +LE    +   T I V+HD
Sbjct:   40 LSIRGLRKSFGDNEVLRGIDLHIPAGQFVAIVGKSGCGKSTLLRLIAGLDKIDAGTISLGS-DVQPEDIRVMFQEPRLLPWARVLANVEVGLGRDRASKDAHARAEKALTEVGLADKRDQWPSVLSGGQKQRVALGRALVSRPRVLAFDEPLGALDALTRISMQRLLERVWRDQGFTAILVTHD 222          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: PSTB_XANC5 (Phosphate import ATP-binding protein pstB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=pstB PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 56/201 (27.86%), Postives = 91/201 (45.27%), Query Frame = 3
Query:   30 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-----EKPRGGEVLLGEHNVLPNYFEQNQAEA---------LDLDKTVLETVA----------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKG--TVITVSHD 554
            V  +NL+F Y+        N+ I     TA+IGP+GCGKSTLL++   +     +    GEVLL   N+L   +  N+  +         +    T+ E VA          +A    R++         +   D L +    LSGG++ RL   + +     +L+LDEPT+ LD      +E+ + E K   T++ V+H+
Sbjct:   21 VAARNLDFYYDKYHALKSINIEIPEKRVTALIGPSGCGKSTLLRIFNRIYALYPKMEARGEVLLDNENILSPKYPMNRLRSKVGMVFQKPVPFPMTIFENVAYGIRHHEKLSKADMQNRVEQALRQGALWDEVKDKLGQSALGLSGGQQQRLCIARAVALRPDVLLLDEPTSALDPISTSRIEQLVEELKRDYTIVIVTHN 221          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: PSTB_XANAC (Phosphate import ATP-binding protein pstB OS=Xanthomonas axonopodis pv. citri GN=pstB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 56/201 (27.86%), Postives = 91/201 (45.27%), Query Frame = 3
Query:   30 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-----EKPRGGEVLLGEHNVLPNYFEQNQAEA---------LDLDKTVLETVA----------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKG--TVITVSHD 554
            V  +NL+F Y+        N+ I     TA+IGP+GCGKSTLL++   +     +    GEVLL   N+L   +  N+  +         +    T+ E VA          +A    R++         +   D L +    LSGG++ RL   + +     +L+LDEPT+ LD      +E+ + E K   T++ V+H+
Sbjct:   21 VAARNLDFYYDKYHALKSINIEIPEKRVTALIGPSGCGKSTLLRIFNRIYALYPKMEARGEVLLDNENILSPKYPMNRLRSKVGMVFQKPVPFPMTIFENVAYGIRHHEKLSKADMQNRVEQALRQGALWDEVKDKLGQSALGLSGGQQQRLCIARAVALRPDVLLLDEPTSALDPISTSRIEQLVEELKRDYTIVIVTHN 221          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: PSTB_GLUOX (Phosphate import ATP-binding protein pstB OS=Gluconobacter oxydans GN=pstB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 56/207 (27.05%), Postives = 93/207 (44.93%), Query Frame = 3
Query:   12 RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLLGEHNVL-------------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKG--TVITVSHD 554
            +S    + ++NL F Y +    +  ++       TA+IGP+GCGKSTLL++   +      +   GEV+    NVL                   P  F  +  + +     + E + +A  D R+ D+   +   N   D L+   S LSGG++ RL   + +     +L+LDEPT+ LD      +EE + E K   T+  V+H+
Sbjct:   16 KSPEVALAVRNLNFYYGENHALHDISIDFPARRVTAMIGPSGCGKSTLLRVFNRMYDLYPGQRATGEVIFDGRNVLERDLDLNILRARVGMVFQKPTPFPMSIYDNIAFGVRLHEKLNKAEMDARVQDVLTRVALWNEVRDRLNAPASGLSGGQQQRLCIARSIATRPEVLLLDEPTSALDPISTARIEELLDELKEEFTIAIVTHN 222          
The following BLAST results are available for this feature:
BLAST of EY728236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UGPC_RHIME6.634e-1227.55sn-glycerol-3-phosphate import ATP-binding protein... [more]
TROB_TREPA6.634e-1229.69Zinc transport system ATP-binding protein troB OS=... [more]
THIQ_PHOLL6.634e-1228.13Thiamine import ATP-binding protein thiQ OS=Photor... [more]
THIQ_ECO576.634e-1230.73Thiamine import ATP-binding protein thiQ OS=Escher... [more]
TAP1_GORGO6.634e-1227.62Antigen peptide transporter 1 OS=Gorilla gorilla g... [more]
SSUB_ZYMMO6.634e-1230.67Aliphatic sulfonates import ATP-binding protein ss... [more]
SSUB_BRAJA6.634e-1230.43Aliphatic sulfonates import ATP-binding protein ss... [more]
PSTB_XANC56.634e-1227.86Phosphate import ATP-binding protein pstB OS=Xanth... [more]
PSTB_XANAC6.634e-1227.86Phosphate import ATP-binding protein pstB OS=Xanth... [more]
PSTB_GLUOX6.634e-1227.05Phosphate import ATP-binding protein pstB OS=Gluco... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-C03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728236 ID=EY728236; Name=EY728236; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAGAAGTGGTAGATCTGTTGTAACAATTAAGAACCTGGAA
TTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCTCACAATTGA
AAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTGGTAAGAGTA
CTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGAGGTGAAGTT
CTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCAGAATCAGGC
TGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAGCAGAAGCTG
CAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGTCGTTGTAAT
TTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAGTGGTGGTGA
GAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCATCAACTCTTC
TAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTTCAAAGAGATG
CTCGAGGAGGCCATATCAGAGTACAAGGGCACAGTAATCACAGTTTCTCA
TGACCGATACTTCGTAAAGCAAATAGTAATAGAGTAGTGGAGGTTAAAGG
CAGCAATTTACAGGACTATGCTTGTGATTACAATTATTACCTAGAGAAAA
ACCTCCATGCTCGGGAAAGGGACCTTGAACGTGAGGCAGAGCTCCAAGAA
AAGGCTTCCAAAAATCAAGGCCAATCCNAGATGTCAAAGGCTGAGAAGGA
AGCTCGGAAGAAACAGAAATGCAGGCCTTTCAAGCAGCGAAACAAAATCA
AAAGGCTCGAAGATGGCAAAAATGGAAATGAAAGATAACCCGTATATATG
CGAAGGAAATCCATTGTACCTAATTTGCTGAGCAAATTCAGG
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