EY728236

Overview
NameEY728236
Unique NameEY728236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: AB14B_ARATH (ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 53/193 (27.46%), Postives = 94/193 (48.70%), Query Frame = 3
Query:   45 LEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------------PNYFEQNQAE--ALDLDKTVLETVAEAAEDWRIDD-IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEY--KGTVITVSH 551
            + F Y  R  ++F   + TI  G+  A +GP+G GKST++ ++    +PR GE+LL  +++                  P  F    A    L  +K  ++ + EAA+    D  IK L    N     +    + LSGG+K R+A  + +++   +L+LDE T+ LD   ++++++A+     K T I ++H
Sbjct:  378 VSFAYPSRPNMVFENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNLKLKWLREQMGLVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPNGYN---TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAH 567          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: ZNUC_SHIFL (Zinc import ATP-binding protein znuC OS=Shigella flexneri GN=znuC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 54/188 (28.72%), Postives = 94/188 (50.00%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV---AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPFKEMLEEAISEYKGTVITVSHDRYFV 566
            S+V+++N+   +  R + +  +L ++ G+   ++GPNG GKSTL+++++GL  P  G V+     +   Y  Q     L LD T+  TV            +DI   L R      +++  +  LSGGE  R+   + ++    LLVLDEPT  +D    +   +++++   E    V+ VSHD + V
Sbjct:    3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVTPDEG-VIKRNGKLRIGYVPQK----LYLDTTLPLTVNRFLRLRPGTHKEDILPALKRVQ-AGHLINAPMQKLSGGETQRVLLARALLNCPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCGVLMVSHDLHLV 184          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: ZNUC_SHIF8 (Zinc import ATP-binding protein znuC OS=Shigella flexneri serotype 5b (strain 8401) GN=znuC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 54/188 (28.72%), Postives = 94/188 (50.00%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV---AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPFKEMLEEAISEYKGTVITVSHDRYFV 566
            S+V+++N+   +  R + +  +L ++ G+   ++GPNG GKSTL+++++GL  P  G V+     +   Y  Q     L LD T+  TV            +DI   L R      +++  +  LSGGE  R+   + ++    LLVLDEPT  +D    +   +++++   E    V+ VSHD + V
Sbjct:    3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVTPDEG-VIKRNGKLRIGYVPQK----LYLDTTLPLTVNRFLRLRPGTHKEDILPALKRVQ-AGHLINAPMQKLSGGETQRVLLARALLNCPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCGVLMVSHDLHLV 184          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: ZNUC_PSEAE (Zinc import ATP-binding protein znuC OS=Pseudomonas aeruginosa GN=znuC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 54/185 (29.19%), Postives = 89/185 (48.11%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISE----YKGTVITVSHDRYFV 566
            ++V +  +   +  + + +  +L IE G+   +IGPNG GK+TL++ ++GL KP  GEV       +  Y  Q       L  +VL  +       R   +  L  R    A +L+R +  +SGGE  R+   + +++   LLVLDEP   +D+  +  L   I +    Y   V+ VSHD + V
Sbjct:    4 ALVRLTQVGVSFNGQAVLSDVDLAIEPGQIVTLIGPNGAGKTTLVRSVLGLLKPHVGEVWRRPRLTI-GYMPQKLHVDATLPLSVLRFLRLVPGVKREQALAAL--REVGAAHVLERPLQSISGGELQRVLLARALLRKPELLVLDEPVQGVDVAGQAELYRLIGKLRDRYGCGVLMVSHDLHLV 185          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: ZNUC_PSEAB (Zinc import ATP-binding protein znuC OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=znuC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 54/185 (29.19%), Postives = 89/185 (48.11%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISE----YKGTVITVSHDRYFV 566
            ++V +  +   +  + + +  +L IE G+   +IGPNG GK+TL++ ++GL KP  GEV       +  Y  Q       L  +VL  +       R   +  L  R    A +L+R +  +SGGE  R+   + +++   LLVLDEP   +D+  +  L   I +    Y   V+ VSHD + V
Sbjct:    4 ALVRLTQVGVSFNGQAVLSDVDLAIEPGQIVTLIGPNGAGKTTLVRSVLGLLKPHVGEVWRRPRLTI-GYMPQKLHVDATLPLSVLRFLRLVPGVKREQALAAL--REVGAAHVLERPLQSISGGELQRVLLARALLRKPELLVLDEPVQGVDVAGQAELYRLIGKLRDRYGCGVLMVSHDLHLV 185          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: YKOD_BACSU (Putative HMP/thiamine import ATP-binding protein ykoD OS=Bacillus subtilis GN=ykoD PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 57/199 (28.64%), Postives = 91/199 (45.73%), Query Frame = 3
Query:   15 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL------DKTVLETV------AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKG---TVITVSHDRYFV 566
            SG SV+ + +L F    + +F   + ++  G  TA++GPNG GKSTLL ++  L KP+ G++LL +   L  Y E+   + +         + V +TV       + A        + LL R    A + D     +S G+K RL+    ++    +L+LDEPT   D        E I   K     V+ ++HD   V
Sbjct:  290 SGESVLEVSSLSFARGQQAIFKDISFSLREGSLTALVGPNGTGKSTLLSVLASLMKPQSGKILLYD-QPLQKYKEKELRKRMGFVFQNPEHQFVTDTVYDELLFGQKANAETEKKAQHLLQRFGL-AHLADHHPFAISQGQKRRLSVATMLMHDVKVLLLDEPTFGQDARTAAECMEMIQRIKAEGTAVLMITHDMELV 486          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: Y3108_BRUME (Putative ATP-binding protein BMEII0108 OS=Brucella melitensis GN=BMEII0108 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 56/182 (30.77%), Postives = 85/182 (46.70%), Query Frame = 3
Query:   30 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPFKEMLEEAISEYKGTVITVSHD 554
            ++  N+   Y   L  +R NL I  GE   ++GP+GCGKST + +  GL +P GG +L+G+  V     E+    Q  AL    TV + V     D+               AD L +    LSGG K R A  +       +L++DEP   LD    +  ++ L +A S  + TV+ ++HD
Sbjct:    5 ISFNNVVMRYGGFLALDRLNLDIADGEFVTVVGPSGCGKSTAMNIADGLLQPSGGGILVGDKPVTGPGPERGVIFQQYALFPWLTVRQNVEFGLTDF---------------ADALPK---ALSGGMKQRCAIARAYAAAPEILLMDEPFGALDALTRVHMQDQLLDAWSRERRTVMFITHD 168          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: UGPC_PSYIN (sn-glycerol-3-phosphate import ATP-binding protein ugpC OS=Psychromonas ingrahamii (strain 37) GN=ugpC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 56/199 (28.14%), Postives = 103/199 (51.76%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE--------ALDLDKTVLETVAEAAEDWRID--DIKGLLGRCNFKADM------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYK----GTVITVSHDR 557
            S +T+ N+   Y +     ++ +L IE GE   ++GP+GCGKSTLL++I GLE+   G++ + +   L N  E ++ +        AL    +V + +A    + +    DI+ ++   N  A+M      L+RK   LSGG++ R+A  + +V+   + + DEP ++LD   +  +   I + +     T + V+HD+
Sbjct:    2 STLTLSNITKSYPNGYQAVHKLSLNIEDGEMVVLVGPSGCGKSTLLRMIAGLEEITSGKLKIDD--CLVNNLEPSERDIAMVFQNYALYPHMSVYDNMAYGLRNRKTPKADIQRIV---NDTAEMLEIDHLLERKPKELSGGQRQRVAMGRAIVRKPKIFLFDEPLSNLDAKLRVQMRLQIKKLQRRLATTSVYVTHDQ 195          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: UGPC_BRAJA (sn-glycerol-3-phosphate import ATP-binding protein ugpC OS=Bradyrhizobium japonicum GN=ugpC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 56/203 (27.59%), Postives = 94/203 (46.31%), Query Frame = 3
Query:   30 VTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVL----------------------ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYK----GTVITVSHDR 557
            VT++N+   Y          N+ +  G+   ++GP+GCGKSTLL+++ GLE   GGE+ +G   V       NQ E  D D  ++                        +AEA    R+++   +L        ML+RK   LSGG++ R+A  + +V+   + + DEP ++LD   +  +   I + +     T I V+HD+
Sbjct:    4 VTLRNVRKTYTGGFEAIKGVNVDVADGQFCVLVGPSGCGKSTLLRMVAGLETVTGGEIDIGGRVV-------NQIEPADRDIAMVFQNYALYPHMSVYNNMAYGLRNRGMAEAEIKTRVEEAARVLE----LTSMLERKPRQLSGGQRQRVAMGRAIVRQPKVFLFDEPLSNLDAKLRIAMRVEIRKLQRRLNTTSIYVTHDQ 195          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: THIQ_VIBF1 (Thiamine import ATP-binding protein thiQ OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=thiQ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 53/174 (30.46%), Postives = 84/174 (48.28%), Query Frame = 3
Query:   87 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKE----MLEEAISEYKGTVITVSH 551
            +L +E+G   AI+GP+G GKSTLL L+ G  +P  G++ +   + L     Q       Q   L    +V E +             +  RI+D    +G      D+L R    LSGG+K R+A  + +V+   +L+LDEP + LD   +E    +++  I   K TV+ V+H
Sbjct:   19 DLNVEQGSVVAILGPSGAGKSTLLSLLAGFIEPESGDITINNESQLSLAPHQRPLSMLFQEHNLFAHLSVAENIGLGIKPNLRLNEKDKKRINDAARQVG----VDDLLQRLPEQLSGGQKQRVALARCLVQQKPVLLLDEPFSALDPILREEMIVLIQALIKSEKLTVLMVTH 188          
The following BLAST results are available for this feature:
BLAST of EY728236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AB14B_ARATH6.634e-1227.46ABC transporter B family member 14 OS=Arabidopsis ... [more]
ZNUC_SHIFL8.664e-1228.72Zinc import ATP-binding protein znuC OS=Shigella f... [more]
ZNUC_SHIF88.664e-1228.72Zinc import ATP-binding protein znuC OS=Shigella f... [more]
ZNUC_PSEAE8.664e-1229.19Zinc import ATP-binding protein znuC OS=Pseudomona... [more]
ZNUC_PSEAB8.664e-1229.19Zinc import ATP-binding protein znuC OS=Pseudomona... [more]
YKOD_BACSU8.664e-1228.64Putative HMP/thiamine import ATP-binding protein y... [more]
Y3108_BRUME8.664e-1230.77Putative ATP-binding protein BMEII0108 OS=Brucella... [more]
UGPC_PSYIN8.664e-1228.14sn-glycerol-3-phosphate import ATP-binding protein... [more]
UGPC_BRAJA8.664e-1227.59sn-glycerol-3-phosphate import ATP-binding protein... [more]
THIQ_VIBF18.664e-1230.46Thiamine import ATP-binding protein thiQ OS=Vibrio... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-C03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728236 ID=EY728236; Name=EY728236; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAGAAGTGGTAGATCTGTTGTAACAATTAAGAACCTGGAA
TTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCTCACAATTGA
AAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTGGTAAGAGTA
CTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGAGGTGAAGTT
CTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCAGAATCAGGC
TGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAGCAGAAGCTG
CAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGTCGTTGTAAT
TTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAGTGGTGGTGA
GAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCATCAACTCTTC
TAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTTCAAAGAGATG
CTCGAGGAGGCCATATCAGAGTACAAGGGCACAGTAATCACAGTTTCTCA
TGACCGATACTTCGTAAAGCAAATAGTAATAGAGTAGTGGAGGTTAAAGG
CAGCAATTTACAGGACTATGCTTGTGATTACAATTATTACCTAGAGAAAA
ACCTCCATGCTCGGGAAAGGGACCTTGAACGTGAGGCAGAGCTCCAAGAA
AAGGCTTCCAAAAATCAAGGCCAATCCNAGATGTCAAAGGCTGAGAAGGA
AGCTCGGAAGAAACAGAAATGCAGGCCTTTCAAGCAGCGAAACAAAATCA
AAAGGCTCGAAGATGGCAAAAATGGAAATGAAAGATAACCCGTATATATG
CGAAGGAAATCCATTGTACCTAATTTGCTGAGCAAATTCAGG
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