EY728236

Overview
NameEY728236
Unique NameEY728236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: YKPA_BACSU (Uncharacterized ABC transporter ATP-binding protein ykpA OS=Bacillus subtilis GN=ykpA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.189e-16
Identity = 54/188 (28.72%), Postives = 93/188 (49.47%), Query Frame = 3
Query:   18 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD-LDKTVLETVAE-AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKGTVITVSHDRYFVKQI 575
            G  V+ ++ L    +   + +  +  + R +K A  G N    +TL K+I G  +   G    G       YF ++ +E  +  D  +++ + + +  D     ++G LGR  F  + + +K ++LSGGEK R    K M+  + +L+LDEPTNHLD+     L   +  +KG ++  SHD  FV+ I
Sbjct:  316 GNDVLRVEGLTKTIDGVKVLDNVSFIMNREDKIAFTGRNELAVTTLFKIISGEMEADSGTFKWGV-TTSQAYFPKDNSEYFEGSDLNLVDWLRQYSPHDQSESFLRGFLGRMLFSGEEVHKKANVLSGGEKVRCMLSKAMLSGANILILDEPTNHLDLESITALNNGLISFKGAMLFTSHDHQFVQTI 502          

HSP 2 Score: 21.557 bits (44), Expect = 1.189e-16
Identity = 7/24 (29.17%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  575 SNRVVEVKGSNLQDYACDYNYYLE 646
            +NR++E+  + + D    Y+ +LE
Sbjct:  503 ANRIIEITPNGIVDKQMSYDEFLE 526          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: ZNUC_PHOLL (Zinc import ATP-binding protein znuC OS=Photorhabdus luminescens subsp. laumondii GN=znuC PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.526e-16
Identity = 59/188 (31.38%), Postives = 98/188 (52.13%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAE---AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI----PFKEMLEEAISEYKGTVITVSHDRYFV 566
            +++T+KN+   + DR + N  +L ++RG    ++GPNG GKSTL+++++GL +P  G +   +  +   Y  Q     L LD T+  TV          +  DI   L R N  A +L + +  LSGGE  R+   + ++    LLVLDEPT  +D+       +++ +  +E    V+ VSHD + V
Sbjct:    3 TLITLKNVAVNFGDRRVLNNISLHLQRGNILTLLGPNGAGKSTLVRVVLGLIEPSSGTIEQTD-GLKIGYVPQK----LHLDPTLPLTVKRFMMLKPGVKSGDILPALERVN-AAHLLQQPMQKLSGGESQRVLLARALLNQPQLLVLDEPTQGVDVNGQLALYDLINQIRTELHCAVLMVSHDLHLV 184          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: POTA_MYCMS (Spermidine/putrescine import ATP-binding protein potA OS=Mycoplasma mycoides subsp. mycoides SC GN=potA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.526e-16
Identity = 53/199 (26.63%), Postives = 101/199 (50.75%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR-----------------KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKG----TVITVSHDR 557
            +++ ++N+   Y+ +++    +  ++ GE   ++GP+GCGK+T+LK+I G +KP  GE+L  + N++P    + Q        T+ ++ A        D++   L     K D+++R                 K+  LSGG+K R+A  + +V    +L+LDEP   LD+  ++ ++E +   +     T I VSHD+
Sbjct:    4 NILELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKRQF------NTIFQSYALFPHLNVFDNVAFGLTIKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRIAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQ 196          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: ADCC_BACSU (Probable zinc transport system ATP-binding protein adcC OS=Bacillus subtilis GN=adcC PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.526e-16
Identity = 63/211 (29.86%), Postives = 106/211 (50.24%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----LPNYFEQNQAEALD--LDKTVLETVAEAAED---W--RIDDIKGLLGRCNFKA----DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP----FKEMLEEAISEYKGTVITVSHDRYFVKQIVIE*WRLK 599
            ++V++K++ FGY    + ++ +L IE GE   I GPNG  KSTL+K+++G+ KP  G V + + N     L   +   Q  + +     TVLE V         W  R+++   L      K     D+  RK+  LSGG+K ++   + +     LL+LDEPT  +D      F E +   +  +  TV+ V+H++  V+Q + +  RL+
Sbjct:    2 NLVSLKDIVFGYSHTPVLDKVSLDIESGEFVGITGPNGASKSTLIKVMLGMLKPWEGTVTISKRNTEGKRLTIGYVPQQISSFNAGFPSTVLELVQSGRYTKGKWFKRLNEEDHLEVEKALKMVEMWDLRHRKIGDLSGGQKQKICIARMLASNPDLLMLDEPTTAVDYDSRKGFYEFMHHLVKNHNRTVVMVTHEQNEVQQFLDKVIRLE 212          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: POTA_MYCCT (Spermidine/putrescine import ATP-binding protein potA OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=potA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.993e-16
Identity = 53/199 (26.63%), Postives = 101/199 (50.75%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR-----------------KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKG----TVITVSHDR 557
            +++ ++N+   Y+ +++    +  ++ GE   ++GP+GCGK+T+LK+I G +KP  GE+L  + N++P    + Q        T+ ++ A        D++   L     K D+++R                 K+  LSGG+K R+A  + +V    +L+LDEP   LD+  ++ ++E +   +     T I VSHD+
Sbjct:    4 NILELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKRQF------NTIFQSYALFPHLNVFDNVAFGLTIKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQ 196          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: POTA_HAES1 (Spermidine/putrescine import ATP-binding protein potA OS=Haemophilus somnus (strain 129Pt) GN=potA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.993e-16
Identity = 65/194 (33.51%), Postives = 102/194 (52.58%), Query Frame = 3
Query:   21 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRID--DIKGLLG---RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPF-KEMLEE--AISEYKG-TVITVSHDR 557
            + ++ +++L   Y+ + + N  NLTI  GE   I+GP+GCGK+T+L+LI G E+   G ++L   +V     E+       Q+ AL    T+ E VA      ++   DIK  +    R     +M DRK + LSGG++ R+A  + +V    +L+LDE  + LD    KEM  E  A+    G T I V+HD+
Sbjct:    8 KPIIELRSLTKSYDTKTIINNFNLTINNGEFLTILGPSGCGKTTVLRLIAGFEELNEGRIILDGEDVTDIPAERRHINTVFQSYALFPHMTIFENVAFGLRMQKVPNADIKPRVMEALRMVRLEEMADRKPTQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKEMQNELKALQRQLGITFIFVTHDQ 201          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: EF3_SCHPO (Elongation factor 3 OS=Schizosaccharomyces pombe GN=tef3 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.993e-16
Identity = 61/185 (32.97%), Postives = 99/185 (53.51%), Query Frame = 3
Query:   42 NLEFG--YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK---PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKG-TVITVSHDRYFVKQIV 578
            N EF   Y  ++L NR  L ++RG +  + GPNG GKSTL++ I+  +    P     +  EH++     ++++A+   +D  +L+  A   +D   D+I   L   +F  ++++  +  LSGG K +LA  + M K   +L+LDEPTNHLD+     LE  +   K  + I VSHD  F+  +V
Sbjct:  437 NCEFSLAYGAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHLRTVYVEHDI-----DESEADTPSVD-FILQDPAVPIKDR--DEIVKALKENSFTDELINMPIGSLSGGWKMKLALTRAMFKNPDILLLDEPTNHLDVVNVAWLENFLVNQKDVSSIIVSHDSGFLDHVV 613          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: EF3A_YEAST (Elongation factor 3A OS=Saccharomyces cerevisiae GN=YEF3 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.993e-16
Identity = 59/185 (31.89%), Postives = 92/185 (49.73%), Query Frame = 3
Query:   42 NLEFG--YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-----GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKGTVITVSHDRYFVKQI 575
            N EF   Y  ++L N+  L ++R  +  I GPNGCGKSTL++ I      G         +  EH++          +    D +VL+ V E+    + + IK  L    F  +M+   +S LSGG K +LA  + +++ + +L+LDEPTNHLD      L   ++    T IT+SHD  F+  +
Sbjct:  433 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDI----------DGTHSDTSVLDFVFESGVGTK-EAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNV 606          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: ZNUC_RICCN (Zinc import ATP-binding protein znuC OS=Rickettsia conorii GN=znuC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.603e-16
Identity = 54/189 (28.57%), Postives = 100/189 (52.91%), Query Frame = 3
Query:   21 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTV---LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI----PFKEMLEEAISEYKGTVITVSHDRYFV 566
            + ++  +N+   + ++L  N  + T+++   T +IGPNG GK+T+++L++GLEKP  GE+++ +  +   Y  Q      DL  TV   LE +A +  +  I +I   +   + K    D+++S LSGG+  ++     +V    L++LDEP   LD+     F +++     +   TV  +SHD + V
Sbjct:    3 KPIIEFRNVSKKFGNKLPINNVSFTVKKNNITTLIGPNGAGKTTIVRLMLGLEKPTSGEIII-DPKLKIGYVPQKFGLTPDLPITVKNFLELLAPSNFNNNIKEINSFIDLEHIK----DQEISKLSGGQFQKVVLACSIVNNPDLIILDEPLQSLDVTSQQEFYQLINLIRKKLNITVFMISHDLFTV 186          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: ZNUC_RICFE (Zinc import ATP-binding protein znuC OS=Rickettsia felis GN=znuC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.399e-16
Identity = 53/189 (28.04%), Postives = 100/189 (52.91%), Query Frame = 3
Query:   21 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTV---LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI----PFKEMLEEAISEYKGTVITVSHDRYFV 566
            + ++  +N+   + ++L  N  + T+++   T +IGPNG GK+T+++L++GLEKP  GE+++ +  +   Y  Q      DL  TV   L+ +A +  +  I +I   +   + K    D+++S LSGG+  ++     +V    L++LDEP   LD+     F +++     +   TV  +SHD + V
Sbjct:    3 KPIIEFRNVSKKFGNKLPINNVSFTVKKNNITTLIGPNGAGKTTIVRLMLGLEKPTNGEIII-DPKLKIGYVPQKFGLTPDLPITVKKFLDLLAPSNFNSNIKEINSFIDLEHIK----DQEISKLSGGQFQKVVLACSIVNKPDLIILDEPLQSLDVTSQQEFYQLINLIRKKLNITVFMISHDLFTV 186          
The following BLAST results are available for this feature:
BLAST of EY728236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YKPA_BACSU1.189e-1628.72Uncharacterized ABC transporter ATP-binding protei... [more]
ZNUC_PHOLL1.526e-1631.38Zinc import ATP-binding protein znuC OS=Photorhabd... [more]
POTA_MYCMS1.526e-1626.63Spermidine/putrescine import ATP-binding protein p... [more]
ADCC_BACSU1.526e-1629.86Probable zinc transport system ATP-binding protein... [more]
POTA_MYCCT1.993e-1626.63Spermidine/putrescine import ATP-binding protein p... [more]
POTA_HAES11.993e-1633.51Spermidine/putrescine import ATP-binding protein p... [more]
EF3_SCHPO1.993e-1632.97Elongation factor 3 OS=Schizosaccharomyces pombe G... [more]
EF3A_YEAST1.993e-1631.89Elongation factor 3A OS=Saccharomyces cerevisiae G... [more]
ZNUC_RICCN2.603e-1628.57Zinc import ATP-binding protein znuC OS=Rickettsia... [more]
ZNUC_RICFE3.399e-1628.04Zinc import ATP-binding protein znuC OS=Rickettsia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-C03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728236 ID=EY728236; Name=EY728236; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAGAAGTGGTAGATCTGTTGTAACAATTAAGAACCTGGAA
TTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCTCACAATTGA
AAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTGGTAAGAGTA
CTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGAGGTGAAGTT
CTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCAGAATCAGGC
TGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAGCAGAAGCTG
CAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGTCGTTGTAAT
TTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAGTGGTGGTGA
GAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCATCAACTCTTC
TAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTTCAAAGAGATG
CTCGAGGAGGCCATATCAGAGTACAAGGGCACAGTAATCACAGTTTCTCA
TGACCGATACTTCGTAAAGCAAATAGTAATAGAGTAGTGGAGGTTAAAGG
CAGCAATTTACAGGACTATGCTTGTGATTACAATTATTACCTAGAGAAAA
ACCTCCATGCTCGGGAAAGGGACCTTGAACGTGAGGCAGAGCTCCAAGAA
AAGGCTTCCAAAAATCAAGGCCAATCCNAGATGTCAAAGGCTGAGAAGGA
AGCTCGGAAGAAACAGAAATGCAGGCCTTTCAAGCAGCGAAACAAAATCA
AAAGGCTCGAAGATGGCAAAAATGGAAATGAAAGATAACCCGTATATATG
CGAAGGAAATCCATTGTACCTAATTTGCTGAGCAAATTCAGG
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