EY728236

Overview
NameEY728236
Unique NameEY728236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: MSRA_STAEP (Erythromycin resistance ATP-binding protein msrA OS=Staphylococcus epidermidis GN=msrA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.758e-15
Identity = 59/164 (35.98%), Postives = 78/164 (47.56%), Query Frame = 3
Query:  108 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKGTVITVSHDRYFVKQIVIE*WRLK 599
            EK A+IG NG GK+TLL +I    KP  G V   E N    YFEQ     L++D                +D   L G    +  +       +SGGEKA+      +   S +L+LDEPTNHLD   K+ L   +  Y GT+I VSHDR  + QI    W ++
Sbjct:   32 EKIALIGGNGTGKTTLLNMIAQKTKPESGTV---ETNGEIQYFEQ-----LNMDVE--------------NDFNTLDGSLMSELHIPMHTTDSMSGGEKAKYKLANVISNYSPILLLDEPTNHLDKIGKDYLNNILKYYYGTLIIVSHDRALIDQIADTIWDIQ 173          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: EF3_CANAL (Elongation factor 3 OS=Candida albicans GN=TEF3 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.758e-15
Identity = 57/182 (31.32%), Postives = 89/182 (48.90%), Query Frame = 3
Query:   42 NLEFG--YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK-GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAISEYKGTVITVSHDRYFVKQI 575
            N EF   Y  ++L N+    ++R  +  + GPNG GKSTL++ I        G+V      +     + ++  +    D TV+E V E  E     D+    L   NF  +M++  +  LSGG K +LA  + ++K + +L+LDEPTNHLD      L   ++    T I VSHD  F+  +
Sbjct:  435 NCEFSLAYGAKILLNKTQFRLKRNRRYGLCGPNGAGKSTLMRAIAN------GQVEGFPTQDECKTVYVEHDIDGTHADTTVVEFVIEDGEVGLTKDVVVDKLREFNFSDEMINMPIQSLSGGWKMKLALARAVLKNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSIIVSHDSGFLDNV 610          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: CBIO2_STAAR (Cobalt import ATP-binding protein cbiO 2 OS=Staphylococcus aureus (strain MRSA252) GN=cbiO2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.758e-15
Identity = 56/197 (28.43%), Postives = 103/197 (52.28%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLT--IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ---------NQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADMLDR---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAI----SEYKGTVITVSHD 554
            SV+  KN+ F Y+    F   +++  I +G+ T+I+G NG GKST+ KL++G+EK + GE+      +  + FE+            +   +   V   VA   E+  +  D++   +     + DML+R   + + LSGG+K R+A    +    ++++LDE T+ LD   ++ L + +    SE+  T+I+++HD
Sbjct:    6 SVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPHDEMHRRVSEALEQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: CBIO2_STAAN (Cobalt import ATP-binding protein cbiO 2 OS=Staphylococcus aureus (strain N315) GN=cbiO2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.758e-15
Identity = 56/197 (28.43%), Postives = 103/197 (52.28%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLT--IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ---------NQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADMLDR---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAI----SEYKGTVITVSHD 554
            SV+  KN+ F Y+    F   +++  I +G+ T+I+G NG GKST+ KL++G+EK + GE+      +  + FE+            +   +   V   VA   E+  +  D++   +     + DML+R   + + LSGG+K R+A    +    ++++LDE T+ LD   ++ L + +    SE+  T+I+++HD
Sbjct:    6 SVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPHDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: CBIO2_STAAM (Cobalt import ATP-binding protein cbiO 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=cbiO2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.758e-15
Identity = 56/197 (28.43%), Postives = 103/197 (52.28%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLT--IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ---------NQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADMLDR---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAI----SEYKGTVITVSHD 554
            SV+  KN+ F Y+    F   +++  I +G+ T+I+G NG GKST+ KL++G+EK + GE+      +  + FE+            +   +   V   VA   E+  +  D++   +     + DML+R   + + LSGG+K R+A    +    ++++LDE T+ LD   ++ L + +    SE+  T+I+++HD
Sbjct:    6 SVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPHDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: CBIO2_STAAC (Cobalt import ATP-binding protein cbiO 2 OS=Staphylococcus aureus (strain COL) GN=cbiO2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.758e-15
Identity = 56/197 (28.43%), Postives = 103/197 (52.28%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLT--IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ---------NQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADMLDR---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAI----SEYKGTVITVSHD 554
            SV+  KN+ F Y+    F   +++  I +G+ T+I+G NG GKST+ KL++G+EK + GE+      +  + FE+            +   +   V   VA   E+  +  D++   +     + DML+R   + + LSGG+K R+A    +    ++++LDE T+ LD   ++ L + +    SE+  T+I+++HD
Sbjct:    6 SVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: CBIO2_STAAB (Cobalt import ATP-binding protein cbiO 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=cbiO2 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.758e-15
Identity = 56/197 (28.43%), Postives = 103/197 (52.28%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLT--IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ---------NQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADMLDR---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAI----SEYKGTVITVSHD 554
            SV+  KN+ F Y+    F   +++  I +G+ T+I+G NG GKST+ KL++G+EK + GE+      +  + FE+            +   +   V   VA   E+  +  D++   +     + DML+R   + + LSGG+K R+A    +    ++++LDE T+ LD   ++ L + +    SE+  T+I+++HD
Sbjct:    6 SVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPHDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: CBIO2_STAA8 (Cobalt import ATP-binding protein cbiO 2 OS=Staphylococcus aureus (strain NCTC 8325) GN=cbiO2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.758e-15
Identity = 56/197 (28.43%), Postives = 103/197 (52.28%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLT--IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ---------NQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADMLDR---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAI----SEYKGTVITVSHD 554
            SV+  KN+ F Y+    F   +++  I +G+ T+I+G NG GKST+ KL++G+EK + GE+      +  + FE+            +   +   V   VA   E+  +  D++   +     + DML+R   + + LSGG+K R+A    +    ++++LDE T+ LD   ++ L + +    SE+  T+I+++HD
Sbjct:    6 SVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: CBIO2_STAA3 (Cobalt import ATP-binding protein cbiO 2 OS=Staphylococcus aureus (strain USA300) GN=cbiO2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.758e-15
Identity = 56/197 (28.43%), Postives = 103/197 (52.28%), Query Frame = 3
Query:   24 SVVTIKNLEFGYEDRLLFNRANLT--IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ---------NQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADMLDR---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPFKEMLEEAI----SEYKGTVITVSHD 554
            SV+  KN+ F Y+    F   +++  I +G+ T+I+G NG GKST+ KL++G+EK + GE+      +  + FE+            +   +   V   VA   E+  +  D++   +     + DML+R   + + LSGG+K R+A    +    ++++LDE T+ LD   ++ L + +    SE+  T+I+++HD
Sbjct:    6 SVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202          
BLAST of EY728236 vs. ExPASy Swiss-Prot
Match: SSUB3_RHOSR (Aliphatic sulfonates import ATP-binding protein ssuB 3 OS=Rhodococcus sp. (strain RHA1) GN=ssuB3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.908e-15
Identity = 55/181 (30.39%), Postives = 96/181 (53.04%), Query Frame = 3
Query:   30 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPFKEMLEEAISEYKGTVITVSHD 554
            V++  +   + D+ + +  +L I RGE   ++GP+G GK+TLL+L+ GLE P GG+VL+     +       Q   L   K VL  V+   +  ++  D+ +  L   N  AD      + LSGGE  R+A  + +V+   LL+LDEP   LD    +  ++++ + ++ ++  V+ V+HD
Sbjct:   32 VSLSGVRKSFGDKTVLSGIDLEITRGEFVVLLGPSGTGKTTLLRLLSGLEPPDGGDVLVPRQRTV-----VYQEPRLIPSKRVLANVSVGQKRAQLTRDNARRALAEVNL-ADKERAWPATLSGGEAQRVALARALVREPELLLLDEPFAALDALTRLQMQDLVGDLVARHRPAVLLVTHD 206          
The following BLAST results are available for this feature:
BLAST of EY728236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MSRA_STAEP3.758e-1535.98Erythromycin resistance ATP-binding protein msrA O... [more]
EF3_CANAL3.758e-1531.32Elongation factor 3 OS=Candida albicans GN=TEF3 PE... [more]
CBIO2_STAAR3.758e-1528.43Cobalt import ATP-binding protein cbiO 2 OS=Staphy... [more]
CBIO2_STAAN3.758e-1528.43Cobalt import ATP-binding protein cbiO 2 OS=Staphy... [more]
CBIO2_STAAM3.758e-1528.43Cobalt import ATP-binding protein cbiO 2 OS=Staphy... [more]
CBIO2_STAAC3.758e-1528.43Cobalt import ATP-binding protein cbiO 2 OS=Staphy... [more]
CBIO2_STAAB3.758e-1528.43Cobalt import ATP-binding protein cbiO 2 OS=Staphy... [more]
CBIO2_STAA83.758e-1528.43Cobalt import ATP-binding protein cbiO 2 OS=Staphy... [more]
CBIO2_STAA33.758e-1528.43Cobalt import ATP-binding protein cbiO 2 OS=Staphy... [more]
SSUB3_RHOSR4.908e-1530.39Aliphatic sulfonates import ATP-binding protein ss... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-C03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728236 ID=EY728236; Name=EY728236; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAGAAGTGGTAGATCTGTTGTAACAATTAAGAACCTGGAA
TTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCTCACAATTGA
AAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTGGTAAGAGTA
CTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGAGGTGAAGTT
CTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCAGAATCAGGC
TGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAGCAGAAGCTG
CAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGTCGTTGTAAT
TTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAGTGGTGGTGA
GAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCATCAACTCTTC
TAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTTCAAAGAGATG
CTCGAGGAGGCCATATCAGAGTACAAGGGCACAGTAATCACAGTTTCTCA
TGACCGATACTTCGTAAAGCAAATAGTAATAGAGTAGTGGAGGTTAAAGG
CAGCAATTTACAGGACTATGCTTGTGATTACAATTATTACCTAGAGAAAA
ACCTCCATGCTCGGGAAAGGGACCTTGAACGTGAGGCAGAGCTCCAAGAA
AAGGCTTCCAAAAATCAAGGCCAATCCNAGATGTCAAAGGCTGAGAAGGA
AGCTCGGAAGAAACAGAAATGCAGGCCTTTCAAGCAGCGAAACAAAATCA
AAAGGCTCGAAGATGGCAAAAATGGAAATGAAAGATAACCCGTATATATG
CGAAGGAAATCCATTGTACCTAATTTGCTGAGCAAATTCAGG
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