EY728233

Overview
NameEY728233
Unique NameEY728233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11717 contig Csv1_Contig11717:1..631. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SHEB8 (Co-chaperone protein hscB homolog OS=Shewanella baltica (strain OS185) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.272e-22
Identity = 66/182 (36.26%), Postives = 105/182 (57.69%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE-VTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQR-------EQAERLM------RRMQFLDKLTYEVRQLEERLDD 536
            +F LF+  P+F +D   LA RYREL R VHPD+FA+ +E+++ L+++++A +N+ +QTLK+P +RA ++L++ G EL  E  TV+D  FLMQQM+WR                      + + DEL +SFA       Q+       EQAE  +      R+++F+ KL  E+ ++E+ L D
Sbjct:    3 YFELFKFSPAFDIDTALLAERYRELQRAVHPDKFANDTEQQKLLSVQRTAQVNDGFQTLKDPIRRAEHMLSLRGIELSHETTTVKDTGFLMQQMEWREALEDIRDSADP----------QASIDELYQSFAQYRAQLTQQLTQLLTSEQAEDALLAADQVRKLKFMAKLHDELTRVEDALLD 174          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SHEB2 (Co-chaperone protein hscB homolog OS=Shewanella baltica (strain OS223) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.272e-22
Identity = 66/182 (36.26%), Postives = 105/182 (57.69%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE-VTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQR-------EQAERLM------RRMQFLDKLTYEVRQLEERLDD 536
            +F LF+  P+F +D   LA RYREL R VHPD+FA+ +E+++ L+++++A +N+ +QTLK+P +RA ++L++ G EL  E  TV+D  FLMQQM+WR                      + + DEL +SFA       Q+       EQAE  +      R+++F+ KL  E+ ++E+ L D
Sbjct:    3 YFELFKFSPAFDIDTALLAERYRELQRAVHPDKFANDTEQQKLLSVQRTAQVNDGFQTLKDPIRRAEHMLSLRGIELSHETTTVKDTGFLMQQMEWREALEDIRDSDDP----------QASIDELYQSFAQYRAQLTQQLTQLLTSEQAEDALLAADQVRKLKFMAKLHDELTRVEDALLD 174          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_ECOSM (Co-chaperone protein hscB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.272e-22
Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+    + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLACEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_VIBHB (Co-chaperone protein hscB homolog OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 63/176 (35.80%), Postives = 100/176 (56.82%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE-VTVQDPDFLMQQMQWRXXXXXXXXXXXXXGV---------AVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERL 530
            HF LF L   F+LD   L++++REL +  HPD FA ASER++ +A++++A +N+AYQ LK+P  RA Y+LA  G E+  E  T+QDP FLM+QM+ R                         ++K+ L   + EL++     W +AA R      +R+++F+ KL  E+  +E++L
Sbjct:    3 HFELFGLPSQFQLDGSLLSSQFRELQKRFHPDNFATASERDRLMAVQKAAQINDAYQVLKHPISRAEYILAENGTEIRGEQQTMQDPMFLMEQMELREELEDIADSSDPESALFDFDSKVSKMYKQHLASVEQELDQGL---WAEAADR------VRKLKFIAKLKNEIELVEDKL 169          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SHISS (Co-chaperone protein hscB OS=Shigella sonnei (strain Ss046) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F  F L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+ A  + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTFFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNEAW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SHIBS (Co-chaperone protein hscB OS=Shigella boydii serotype 4 (strain Sb227) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+    + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SHIB3 (Co-chaperone protein hscB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+    + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_ESCF3 (Co-chaperone protein hscB OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+    + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_ECOUT (Co-chaperone protein hscB OS=Escherichia coli (strain UTI89 / UPEC) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+    + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_ECOLU (Co-chaperone protein hscB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+    + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
The following BLAST results are available for this feature:
BLAST of EY728233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
HSCB_SHEB82.272e-2236.26Co-chaperone protein hscB homolog OS=Shewanella ba... [more]
HSCB_SHEB22.272e-2236.26Co-chaperone protein hscB homolog OS=Shewanella ba... [more]
HSCB_ECOSM2.272e-2236.69Co-chaperone protein hscB OS=Escherichia coli (str... [more]
HSCB_VIBHB2.967e-2235.80Co-chaperone protein hscB homolog OS=Vibrio harvey... [more]
HSCB_SHISS2.967e-2236.69Co-chaperone protein hscB OS=Shigella sonnei (stra... [more]
HSCB_SHIBS2.967e-2236.69Co-chaperone protein hscB OS=Shigella boydii serot... [more]
HSCB_SHIB32.967e-2236.69Co-chaperone protein hscB OS=Shigella boydii serot... [more]
HSCB_ESCF32.967e-2236.69Co-chaperone protein hscB OS=Escherichia fergusoni... [more]
HSCB_ECOUT2.967e-2236.69Co-chaperone protein hscB OS=Escherichia coli (str... [more]
HSCB_ECOLU2.967e-2236.69Co-chaperone protein hscB OS=Escherichia coli O17:... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728233 ID=EY728233; Name=EY728233; organism=Citrus sinensis; type=EST; length=631bp
AACATCTGAGGCTGATTGTGGGTACTCCTTGTCATTTCGCTTTATTCGAG
CTGCAGCCGAGTTTTCGACTGGACCTTGAACAGCTTGCCACGCGCTACCG
TGAACTGGCGCGTGGGGTGCATCCGGACCGCTTTGCTGACGCTTCCGAGC
GTGAGCAACGCTTGGCGCTGGAGCAATCAGCCAGCCTCAACGAAGCCTAT
CAGACGCTCAAGAACCCTCCCAAACGCGCGCGCTACCTGCTCGCCATGGG
CGGTCGCGAGCTGCCGCTTGAAGTCACGGTCCAGGACCCTGATTTCCTGA
TGCAGCAGATGCAATGGCGCGAGGAGCTCGAAGAACTGCAGGACGAGGCC
GATCTGGCCGGAGTCGCGGTCTTCAAGCGCCGTCTGAAAGTGGCCCAGGA
TGAACTCAACGAAAGCTTCGCAGCCTGTTGGGATGACGCAGCGCAACGTG
AGCAGGCCGAACGCCTGATGCGGCGCATGCAGTTCCTCGACAAGCTCACC
TACGAAGTGCGCCAGTTAGAAGAGCGCCTCGACGATTAACCCAGTGCCGC
CCCAGTTGCACGCCTGATATACAGATAAGTCCTGNATACCATGGCCCTAC
TGCAGATCGCCGAACCCGGTCAAAGTCCTCA
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