EY728233

Overview
NameEY728233
Unique NameEY728233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11717 contig Csv1_Contig11717:1..631. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_ECO5E (Co-chaperone protein hscB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+    + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_ECO57 (Co-chaperone protein hscB OS=Escherichia coli O157:H7 GN=hscB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+    + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_ECO45 (Co-chaperone protein hscB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+    + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_ECO27 (Co-chaperone protein hscB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+    + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_BURP8 (Co-chaperone protein hscB homolog OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 60/169 (35.50%), Postives = 94/169 (55.62%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE-VTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            HFALF L   F LD+  L   YR +   VHPDRFA A + ++R+A++ +   NEAYQTL +P KRARYLL++ G ++  E  T  +P FLMQQM+WR              +      L+  ++++  +  A   D+   + A   +R++ F++++  E+    ERLD+
Sbjct:    8 HFALFNLPEQFGLDVSALDRAYRTVQAQVHPDRFAAAGDAQKRIAMQWATRTNEAYQTLHDPLKRARYLLSLRGIDVGAENNTAMEPAFLMQQMEWRESIEDASAAKNVDALDALLTDLR-DEEKVRFTKLAALLDSGSNQAASEAVRQLMFIERVAAEIGTQIERLDN 175          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_ALISL (Co-chaperone protein hscB homolog OS=Aliivibrio salmonicida (strain LFI1238) GN=hscB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 65/176 (36.93%), Postives = 98/176 (55.68%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE-VTVQDPDFLMQQMQWRXXXXXXXXXXXXXGV---------AVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERL 530
            HF LF L   F LD   L+ ++ EL +  HPD FA +SER++ L+++++A +N+AYQTLKNP  RA Y+L+  G ++  E  T+QDP FLMQQM+ R                        A+ K +L   + +L       W +AAQ       +R+++F+DKL  EV +LE++L
Sbjct:    3 HFELFGLPNQFELDGGLLSAQFLELQKRFHPDNFATSSERDRLLSVQKAAQINDAYQTLKNPVTRAEYILSEQGHDIRGEQTTMQDPMFLMQQMELREDLEDLLSSSDPESALFDFSENVSAMRKTQLAELKQQLESEL---WQEAAQS------VRKLKFIDKLNQEVEKLEDKL 169          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SHIFL (Co-chaperone protein hscB OS=Shigella flexneri GN=hscB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.875e-22
Identity = 63/169 (37.28%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S  EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+ A  + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSLAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNEAW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SHIF8 (Co-chaperone protein hscB OS=Shigella flexneri serotype 5b (strain 8401) GN=hscB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.875e-22
Identity = 63/169 (37.28%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S  EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+ A  + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSLAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNEAW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SHIDS (Co-chaperone protein hscB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=hscB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.875e-22
Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+      A+  +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAVAD-TVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_MANSM (Co-chaperone protein hscB homolog OS=Mannheimia succiniciproducens (strain MBEL55E) GN=hscB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.875e-22
Identity = 61/170 (35.88%), Postives = 102/170 (60.00%), Query Frame = 3
Query:   36 FALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAM--GGRELPLEVTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVA-QDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            FALF+L   F+LD  +L+ RY  L + +HPD FA++S +EQRLA+++SA +N+A Q LK+P  RA  ++A+  G ++   E + QD  FLMQQMQWR             G+  F   ++ + +++++E   A        +QA+ +  R++F+ KL  E+ ++E++L D
Sbjct:    5 FALFDLPIEFQLDQNRLSERYLALQKALHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRADCIIALNTGEQQNTEEKSTQDMAFLMQQMQWREQLEEIENTQDIDGLMTFSAEIEQSNKEKISEISTAL--SMKDWQQAKLINDRLRFIKKLMTEIERIEDKLAD 172          
The following BLAST results are available for this feature:
BLAST of EY728233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
HSCB_ECO5E2.967e-2236.69Co-chaperone protein hscB OS=Escherichia coli O157... [more]
HSCB_ECO572.967e-2236.69Co-chaperone protein hscB OS=Escherichia coli O157... [more]
HSCB_ECO452.967e-2236.69Co-chaperone protein hscB OS=Escherichia coli O45:... [more]
HSCB_ECO272.967e-2236.69Co-chaperone protein hscB OS=Escherichia coli O127... [more]
HSCB_BURP82.967e-2235.50Co-chaperone protein hscB homolog OS=Burkholderia ... [more]
HSCB_ALISL2.967e-2236.93Co-chaperone protein hscB homolog OS=Aliivibrio sa... [more]
HSCB_SHIFL3.875e-2237.28Co-chaperone protein hscB OS=Shigella flexneri GN=... [more]
HSCB_SHIF83.875e-2237.28Co-chaperone protein hscB OS=Shigella flexneri ser... [more]
HSCB_SHIDS3.875e-2236.69Co-chaperone protein hscB OS=Shigella dysenteriae ... [more]
HSCB_MANSM3.875e-2235.88Co-chaperone protein hscB homolog OS=Mannheimia su... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728233 ID=EY728233; Name=EY728233; organism=Citrus sinensis; type=EST; length=631bp
AACATCTGAGGCTGATTGTGGGTACTCCTTGTCATTTCGCTTTATTCGAG
CTGCAGCCGAGTTTTCGACTGGACCTTGAACAGCTTGCCACGCGCTACCG
TGAACTGGCGCGTGGGGTGCATCCGGACCGCTTTGCTGACGCTTCCGAGC
GTGAGCAACGCTTGGCGCTGGAGCAATCAGCCAGCCTCAACGAAGCCTAT
CAGACGCTCAAGAACCCTCCCAAACGCGCGCGCTACCTGCTCGCCATGGG
CGGTCGCGAGCTGCCGCTTGAAGTCACGGTCCAGGACCCTGATTTCCTGA
TGCAGCAGATGCAATGGCGCGAGGAGCTCGAAGAACTGCAGGACGAGGCC
GATCTGGCCGGAGTCGCGGTCTTCAAGCGCCGTCTGAAAGTGGCCCAGGA
TGAACTCAACGAAAGCTTCGCAGCCTGTTGGGATGACGCAGCGCAACGTG
AGCAGGCCGAACGCCTGATGCGGCGCATGCAGTTCCTCGACAAGCTCACC
TACGAAGTGCGCCAGTTAGAAGAGCGCCTCGACGATTAACCCAGTGCCGC
CCCAGTTGCACGCCTGATATACAGATAAGTCCTGNATACCATGGCCCTAC
TGCAGATCGCCGAACCCGGTCAAAGTCCTCA
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