EY728233

Overview
NameEY728233
Unique NameEY728233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11717 contig Csv1_Contig11717:1..631. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SERP5 (Co-chaperone protein hscB OS=Serratia proteamaculans (strain 568) GN=hscB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.061e-22
Identity = 66/168 (39.29%), Postives = 99/168 (58.93%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWR-XXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERL 530
            +F LF L   + +D   LA+RY++L R  HPDRFA   ERE+ +AL+Q+A++NEAYQTLK+P KRA Y+L++ G +L  E  T++D  FLM+Q++ R               +A F  R+     +   +      D+ Q   A   +R+++FLDKL  +V QLEE+L
Sbjct:    3 YFTLFGLPVRYPVDGSLLASRYQDLQRQFHPDRFASQPERERLMALQQAATINEAYQTLKHPLKRAEYMLSLHGFDLGNEQHTMRDTAFLMEQLELREELDAIERKADAQTQLASFGARVNETVKQ-RSALMIQQLDSQQWMDAADTVRKLRFLDKLQQQVEQLEEKL 169          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SHEFN (Co-chaperone protein hscB homolog OS=Shewanella frigidimarina (strain NCIMB 400) GN=hscB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.610e-22
Identity = 65/182 (35.71%), Postives = 103/182 (56.59%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE-VTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFA-------------ACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF + P+F +D   LA RYREL R VHPD+FA+ +E+++ L+++++A +N+ YQTLKNP +RA ++L++ G EL  E  T++D  FLMQQM+WR                      + + DEL ESF                 D++A    A   +R+++F+ KL  E+ ++E+ L D
Sbjct:    3 YFDLFNVVPAFDIDTALLAERYRELQRAVHPDKFANDTEQQKLLSVQRTAQVNDGYQTLKNPLRRAEHMLSLRGIELSHETTTLKDGAFLMQQMEWREALEDIQHNSDP----------QSSIDELYESFGEFESTLLTKLATLLISDESADALLAADQIRKLKFMAKLHDELARIEDGLLD 174          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SALAR (Co-chaperone protein hscB OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=hscB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.610e-22
Identity = 61/169 (36.09%), Postives = 100/169 (59.17%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L  S+ +D + L+ R+++L R  HPD+FA+ ++ +   A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q+  R              +  F +R++   D   +      D+AA  E A+  +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPASYHIDTQALSLRFQDLQRQYHPDKFANGTQAQHLAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREELDDIEQTKDDARLESFIKRVQKMFDTRLQQMVTQLDNAAWGEAAD-TVRKLRFLDKLRSSADQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_ENT38 (Co-chaperone protein hscB OS=Enterobacter sp. (strain 638) GN=hscB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.633e-22
Identity = 64/174 (36.78%), Postives = 95/174 (54.60%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFA-----ACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   + +DL  L  R+++L R  HPD+FA  +  EQ  A+ QSA++N+A+QTL+NP  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++          WD AA        +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPAQYSIDLPALTIRFQDLQRQFHPDKFASGTPAEQLAAVSQSATINQAWQTLRNPLARAEYLLSLHGFDLTSEQHTVRDTAFLMEQLELREELDEIDQAKDEARLESFIKRVKGMFDSRHQQMVEQLNNETWDVAADS------VRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SHEB5 (Co-chaperone protein hscB homolog OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=hscB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.127e-21
Identity = 65/182 (35.71%), Postives = 104/182 (57.14%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE-VTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQR-------EQAERLM------RRMQFLDKLTYEVRQLEERLDD 536
            +F LF+  P+F +D   LA RYREL R VHPD+FA+ +E+++ L+++++A +N+ +QTLK+P +RA ++L++ G EL  E  TV+D  FLMQQM+WR                      + + D L +SFA       Q+       EQAE  +      R+++F+ KL  E+ ++E+ L D
Sbjct:    3 YFELFKFSPAFDIDTALLAERYRELQRAVHPDKFANDTEQQKLLSVQRTAQVNDGFQTLKDPIRRAEHMLSLRGIELSHETTTVKDTGFLMQQMEWREALEDIRDSADP----------QASIDALYQSFAEYRAQLTQQLTQLLTSEQAEDALLAADQVRKLKFMAKLHDELTRVEDALLD 174          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SHESM (Co-chaperone protein hscB homolog OS=Shewanella sp. (strain MR-4) GN=hscB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 64/182 (35.16%), Postives = 101/182 (55.49%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE-VTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAA-------------CWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF+  P+F +D   LA RYREL R VHPD+FA+ +E+++ L+++++A +N+ YQTLK+P +RA ++L++ G +L  E  TV+D  FLMQQM+WR                      +   DEL +SFAA               D       A   +R+++F+ KL  E+ ++E+ L D
Sbjct:    3 YFELFKFSPAFDIDTAVLAERYRELQRAVHPDKFANDTEQQRLLSVQRTAQVNDGYQTLKDPIRRAEHMLSLRGIDLSHETTTVKDTAFLMQQMEWREALEDIRDSADP----------QECIDELYDSFAAYRTKLTKLLTAQLSSDSEEDALLAADQVRKLKFMAKLHDELTRIEDALLD 174          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SALTY (Co-chaperone protein hscB OS=Salmonella typhimurium GN=hscB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   +++D + L+ R+++L R  HPD+FA+ ++ +Q  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q+  R              +  F +R++   D   +      D+AA  + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQIDTQALSLRFQDLQRQYHPDKFANGTQAQQLAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREELDDIEQSKDDARLESFIKRVQKMFDARLQQMVEQLDNAAW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SALSV (Co-chaperone protein hscB OS=Salmonella schwarzengrund (strain CVM19633) GN=hscB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   +++D + L+ R+++L R  HPD+FA+ ++ +Q  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q+  R              +  F +R++   D   +      D+AA  + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQIDTQALSLRFQDLQRQYHPDKFANGTQAQQLAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREELDDIEQSKDDVRLESFIKRVQKMFDARLQQMVEQLDNAAW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SALPC (Co-chaperone protein hscB OS=Salmonella paratyphi C (strain RKS4594) GN=hscB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   +++D + L+ R+++L R  HPD+FA+ ++ +Q  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q+  R              +  F +R++   D   +      D+AA  + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQIDTQALSLRFQDLQRQYHPDKFANGTQAQQLAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREELDDIEQSKDDVRLESFIKRVQKMFDARLQQMVEQLDNAAW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SALNS (Co-chaperone protein hscB OS=Salmonella newport (strain SL254) GN=hscB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   +++D + L+ R+++L R  HPD+FA+ ++ +Q  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q+  R              +  F +R++   D   +      D+AA  + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQIDTQALSLRFQDLQRQYHPDKFANGTQAQQLAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREELDDIEQSKDDVRLESFIKRVQKMFDARLQQMVEQLDNAAW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
The following BLAST results are available for this feature:
BLAST of EY728233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
HSCB_SERP55.061e-2239.29Co-chaperone protein hscB OS=Serratia proteamacula... [more]
HSCB_SHEFN6.610e-2235.71Co-chaperone protein hscB homolog OS=Shewanella fr... [more]
HSCB_SALAR6.610e-2236.09Co-chaperone protein hscB OS=Salmonella arizonae (... [more]
HSCB_ENT388.633e-2236.78Co-chaperone protein hscB OS=Enterobacter sp. (str... [more]
HSCB_SHEB51.127e-2135.71Co-chaperone protein hscB homolog OS=Shewanella ba... [more]
HSCB_SHESM1.923e-2135.16Co-chaperone protein hscB homolog OS=Shewanella sp... [more]
HSCB_SALTY1.923e-2135.50Co-chaperone protein hscB OS=Salmonella typhimuriu... [more]
HSCB_SALSV1.923e-2135.50Co-chaperone protein hscB OS=Salmonella schwarzeng... [more]
HSCB_SALPC1.923e-2135.50Co-chaperone protein hscB OS=Salmonella paratyphi ... [more]
HSCB_SALNS1.923e-2135.50Co-chaperone protein hscB OS=Salmonella newport (s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728233 ID=EY728233; Name=EY728233; organism=Citrus sinensis; type=EST; length=631bp
AACATCTGAGGCTGATTGTGGGTACTCCTTGTCATTTCGCTTTATTCGAG
CTGCAGCCGAGTTTTCGACTGGACCTTGAACAGCTTGCCACGCGCTACCG
TGAACTGGCGCGTGGGGTGCATCCGGACCGCTTTGCTGACGCTTCCGAGC
GTGAGCAACGCTTGGCGCTGGAGCAATCAGCCAGCCTCAACGAAGCCTAT
CAGACGCTCAAGAACCCTCCCAAACGCGCGCGCTACCTGCTCGCCATGGG
CGGTCGCGAGCTGCCGCTTGAAGTCACGGTCCAGGACCCTGATTTCCTGA
TGCAGCAGATGCAATGGCGCGAGGAGCTCGAAGAACTGCAGGACGAGGCC
GATCTGGCCGGAGTCGCGGTCTTCAAGCGCCGTCTGAAAGTGGCCCAGGA
TGAACTCAACGAAAGCTTCGCAGCCTGTTGGGATGACGCAGCGCAACGTG
AGCAGGCCGAACGCCTGATGCGGCGCATGCAGTTCCTCGACAAGCTCACC
TACGAAGTGCGCCAGTTAGAAGAGCGCCTCGACGATTAACCCAGTGCCGC
CCCAGTTGCACGCCTGATATACAGATAAGTCCTGNATACCATGGCCCTAC
TGCAGATCGCCGAACCCGGTCAAAGTCCTCA
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