EY728233

Overview
NameEY728233
Unique NameEY728233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11717 contig Csv1_Contig11717:1..631. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SALHS (Co-chaperone protein hscB OS=Salmonella heidelberg (strain SL476) GN=hscB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   +++D + L+ R+++L R  HPD+FA+ ++ +Q  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q+  R              +  F +R++   D   +      D+AA  + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQIDTQALSLRFQDLQRQYHPDKFANGTQAQQLAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREELDDIEQSKDDARLESFIKRVQKMFDARLQQLVEQLDNAAW-DTAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SALG2 (Co-chaperone protein hscB OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=hscB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   +++D + L+ R+++L R  HPD+FA+ ++ +Q  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q+  R              +  F +R++   D   +      D+AA  + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQIDTQALSLRFQDLQRQYHPDKFANGTQAQQLAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREELDDIEQSKDDVRLESFIKRVQKMFDARLQQMVEQLDNAAW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SALEP (Co-chaperone protein hscB OS=Salmonella enteritidis PT4 (strain P125109) GN=hscB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   +++D + L+ R+++L R  HPD+FA+ ++ +Q  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q+  R              +  F +R++   D   +      D+AA  + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQIDTQALSLRFQDLQRQYHPDKFANGTQAQQLAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREELDDIEQSKDDVRLESFIKRVQKMFDARLQQMVEQLDNAAW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SALDC (Co-chaperone protein hscB OS=Salmonella dublin (strain CT_02021853) GN=hscB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   +++D + L+ R+++L R  HPD+FA+ ++ +Q  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q+  R              +  F +R++   D   +      D+AA  + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQIDTQALSLRFQDLQRQYHPDKFANGTQAQQLAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREELDDIEQSKDDVRLESFIKRVQKMFDARLQQMVEQLDNAAW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SALA4 (Co-chaperone protein hscB OS=Salmonella agona (strain SL483) GN=hscB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   +++D + L+ R+++L R  HPD+FA+ ++ +Q  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q+  R              +  F +R++   D   +      D+AA  + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQIDTQALSLRFQDLQRQYHPDKFANGTQAQQLAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREELDDIDQSKDDVRLESFIKRVQKMFDARLQQMVEQLDNAAW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_CITK8 (Co-chaperone protein hscB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=hscB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 60/169 (35.50%), Postives = 98/169 (57.99%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   ++LD + L+ R+++L R  HPD+FA  ++ EQ  A++ SA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q++ R              +  F +R+K   D  ++      D+    + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPAHYQLDTQALSLRFQDLQRQYHPDKFASGTQAEQLAAVQHSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKTMFDARHQLMVEQLDNETW-DVAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SHESR (Co-chaperone protein hscB homolog OS=Shewanella sp. (strain MR-7) GN=hscB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 64/182 (35.16%), Postives = 101/182 (55.49%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE-VTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAA-------------CWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF+  P+F +D   LA RYREL R VHPD+FA+ +E+++ L+++++A +N+ YQTLK+P +RA ++L++ G +L  E  TV+D  FLMQQM+WR                      +   DEL +SFAA               D       A   +R+++F+ KL  E+ ++E+ L D
Sbjct:    3 YFELFKFSPAFDIDTAVLAERYRELQRAVHPDKFANDTEQQRLLSVQRTAQVNDGYQTLKDPIRRAEHMLSLRGIDLSHETTTVKDTAFLMQQMEWREALEDIRDSADP----------QECIDELYDSFAAYRTKLTKLLTAQLSSDSEEDALLAAVQVRKLKFMAKLHDELTRIEDALLD 174          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SHESA (Co-chaperone protein hscB homolog OS=Shewanella sp. (strain ANA-3) GN=hscB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 66/185 (35.68%), Postives = 104/185 (56.22%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE-VTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAA----------------CWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF+  P+F +D   LA RYREL R VHPD+FA+ +E+++ L+++++A +N+ YQTLK+P +RA ++L++ G +L  E  TV+D  FLMQQM+WR                      + + DEL +SFAA                  DDA     A   +R+++F+ KL  E+ ++E+ L D
Sbjct:    3 YFELFKFSPAFDIDTAVLAERYRELQRAVHPDKFANDTEQQRLLSVQRTAQVNDGYQTLKDPIRRAEHMLSLRGIDLSHETTTVKDTAFLMQQMEWREALEDIRDSADP----------QESIDELYDSFAAYRTKLTKLLTAQLSSGSEDDAL---LAADQVRKLKFMAKLHDELTRIEDALLD 174          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SALTI (Co-chaperone protein hscB OS=Salmonella typhi GN=hscB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   +++D + L+ R+++L R  HPD+FA+ ++ +Q  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q+  R              +  F +R++   D   +      D+AA  + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQIDTQALSFRFQDLQRQYHPDKFANGTQAQQLAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREELDDIEQSKDDARLESFIKRVQKMFDARLQQMVEQLDNAAW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_SALPK (Co-chaperone protein hscB OS=Salmonella paratyphi A (strain AKU_12601) GN=hscB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +F LF L   +++D + L+ R+++L R  HPD+FA+ ++ +Q  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D  FLM+Q+  R              +  F +R++   D   +      D+AA  + A   +R+++FLDKL     QLEE+L D
Sbjct:    3 YFTLFGLPARYQIDTQALSFRFQDLQRQYHPDKFANGTQAQQLAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREELDDIEQSKDDARLESFIKRVQKMFDARLQQMVEQLDNAAW-DAAADTVRKLRFLDKLRSSAEQLEEKLLD 170          
The following BLAST results are available for this feature:
BLAST of EY728233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
HSCB_SALHS1.923e-2135.50Co-chaperone protein hscB OS=Salmonella heidelberg... [more]
HSCB_SALG21.923e-2135.50Co-chaperone protein hscB OS=Salmonella gallinarum... [more]
HSCB_SALEP1.923e-2135.50Co-chaperone protein hscB OS=Salmonella enteritidi... [more]
HSCB_SALDC1.923e-2135.50Co-chaperone protein hscB OS=Salmonella dublin (st... [more]
HSCB_SALA41.923e-2135.50Co-chaperone protein hscB OS=Salmonella agona (str... [more]
HSCB_CITK81.923e-2135.50Co-chaperone protein hscB OS=Citrobacter koseri (s... [more]
HSCB_SHESR2.512e-2135.16Co-chaperone protein hscB homolog OS=Shewanella sp... [more]
HSCB_SHESA2.512e-2135.68Co-chaperone protein hscB homolog OS=Shewanella sp... [more]
HSCB_SALTI2.512e-2135.50Co-chaperone protein hscB OS=Salmonella typhi GN=h... [more]
HSCB_SALPK2.512e-2135.50Co-chaperone protein hscB OS=Salmonella paratyphi ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728233 ID=EY728233; Name=EY728233; organism=Citrus sinensis; type=EST; length=631bp
AACATCTGAGGCTGATTGTGGGTACTCCTTGTCATTTCGCTTTATTCGAG
CTGCAGCCGAGTTTTCGACTGGACCTTGAACAGCTTGCCACGCGCTACCG
TGAACTGGCGCGTGGGGTGCATCCGGACCGCTTTGCTGACGCTTCCGAGC
GTGAGCAACGCTTGGCGCTGGAGCAATCAGCCAGCCTCAACGAAGCCTAT
CAGACGCTCAAGAACCCTCCCAAACGCGCGCGCTACCTGCTCGCCATGGG
CGGTCGCGAGCTGCCGCTTGAAGTCACGGTCCAGGACCCTGATTTCCTGA
TGCAGCAGATGCAATGGCGCGAGGAGCTCGAAGAACTGCAGGACGAGGCC
GATCTGGCCGGAGTCGCGGTCTTCAAGCGCCGTCTGAAAGTGGCCCAGGA
TGAACTCAACGAAAGCTTCGCAGCCTGTTGGGATGACGCAGCGCAACGTG
AGCAGGCCGAACGCCTGATGCGGCGCATGCAGTTCCTCGACAAGCTCACC
TACGAAGTGCGCCAGTTAGAAGAGCGCCTCGACGATTAACCCAGTGCCGC
CCCAGTTGCACGCCTGATATACAGATAAGTCCTGNATACCATGGCCCTAC
TGCAGATCGCCGAACCCGGTCAAAGTCCTCA
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