EY728232

Overview
NameEY728232
Unique NameEY728232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728232 vs. ExPASy Swiss-Prot
Match: KCAB1_HUMAN (Voltage-gated potassium channel subunit beta-1 OS=Homo sapiens GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.620e-32
Identity = 61/125 (48.80%), Postives = 94/125 (75.20%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG Q+    A+ L+  + + G+N FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI++G K SL+RL ++YVDV++ +RPD++TP+EE
Sbjct:   96 KSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEE 220          
BLAST of EY728232 vs. ExPASy Swiss-Prot
Match: KCAB1_BOVIN (Voltage-gated potassium channel subunit beta-1 OS=Bos taurus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.620e-32
Identity = 61/125 (48.80%), Postives = 94/125 (75.20%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG Q+    A+ L+  + + G+N FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI++G K SL+RL ++YVDV++ +RPD++TP+EE
Sbjct:   78 KSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEE 202          
BLAST of EY728232 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.034e-32
Identity = 60/125 (48.00%), Postives = 94/125 (75.20%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG Q+    A+ L+  + + G+N FD AEVYA G+AE I+G  +++ GW+RS +V++TK++WGG+   ++GLSRKHI++G +ASL+RL ++YVDV++ +RPD +TP+EE
Sbjct:   78 KSGLRVSCLGLGTWVTFGGQISDEVAEQLMTIAYESGVNLFDTAEVYAAGKAEVILGNILKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLRASLQRLQLEYVDVVFANRPDNNTPMEE 202          
BLAST of EY728232 vs. ExPASy Swiss-Prot
Match: KCAB3_RAT (Voltage-gated potassium channel subunit beta-3 OS=Rattus norvegicus GN=Kcnab3 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.344e-31
Identity = 61/125 (48.80%), Postives = 90/125 (72.00%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG+Q+    A+ LL  + +HG+N FD AEVYA G+AE  +G  ++  GW+RS  V++TKIFWGGQ   ++GLSRKHI++G + SL RL ++YVD+++ +R D S+P+EE
Sbjct:   85 KSGLRVSCLGLGTWVTFGSQISDETAEDLLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLQGSLDRLQLEYVDIVFANRSDPSSPMEE 209          
BLAST of EY728232 vs. ExPASy Swiss-Prot
Match: KCAB3_XENLA (Voltage-gated potassium channel subunit beta-3 OS=Xenopus laevis GN=kcnab3 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.995e-31
Identity = 61/132 (46.21%), Postives = 95/132 (71.97%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEETENSKGF 481
            ++G RVS L  G  V+FG+Q+    A++L+  + +HG+N FD AEVYA GRAE  +G+ +++  W+RS  VV+TKI+WGGQ   ++GLSRKHI++G + SL+RL +DYVD+++ +R D ++P+EE   +  F
Sbjct:   78 KSGLRVSCLGLGTWVTFGSQISDEVAENLMTVAYEHGVNLFDTAEVYAAGRAERTLGKILKKKEWRRSSYVVTTKIYWGGQAETERGLSRKHIIEGLRGSLERLQLDYVDIVFANRMDPNSPMEEIVRAMTF 209          
BLAST of EY728232 vs. ExPASy Swiss-Prot
Match: KCAB_SCHPO (Putative voltage-gated potassium channel subunit beta OS=Schizosaccharomyces pombe GN=SPCC965.06 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.138e-30
Identity = 71/149 (47.65%), Postives = 98/149 (65.77%), Query Frame = 2
Query:   89 TGPRVSQLSYGA*VSFGNQ-LDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGG--QGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEET--------ENSKGFDRGITIW 502
            +G +VS  S G  +++GN+  DV   K+ L  + D GIN FD AE+Y+NG +E +MG+AI+ELGW RS+ V++TK+F+G   + PN  GLSRKHI++G  ASLKRL + YVDVI  HRPD S P+EE         ++ K F  G + W
Sbjct:   21 SGLKVSAFSLGGWLTYGNEGYDVEHTKNCLKQAWDLGINTFDTAEIYSNGNSETVMGKAIKELGWDRSEYVITTKVFFGAGTKLPNTTGLSRKHIIEGLNASLKRLGLPYVDVIMAHRPDPSVPMEEVVRAFTQLIQDGKAFYWGTSEW 169          
BLAST of EY728232 vs. ExPASy Swiss-Prot
Match: KCAB3_HUMAN (Voltage-gated potassium channel subunit beta-3 OS=Homo sapiens GN=KCNAB3 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.138e-30
Identity = 59/125 (47.20%), Postives = 89/125 (71.20%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG+Q+    A+ +L  + +HG+N FD AEVYA G+AE  +G  ++  GW+RS  V++TKIFWGGQ   ++GLSRKHI++G + SL+RL + YVD+++ +R D + P+EE
Sbjct:   85 KSGLRVSCLGLGTWVTFGSQISDETAEDVLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLRGSLERLQLGYVDIVFANRSDPNCPMEE 209          
BLAST of EY728232 vs. ExPASy Swiss-Prot
Match: YAJO_ECOLI (Uncharacterized oxidoreductase yajO OS=Escherichia coli (strain K12) GN=yajO PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.105e-17
Identity = 55/134 (41.04%), Postives = 83/134 (61.94%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQ--------LDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEET 463
            +T  RVS+L  G  ++FG          L    ++ ++  + + GINFFD A  Y++G +EEI+G+A+R+   +R D+VV+TK+F    G   +GLSR  I++    SL+RL MDYVD++  HR D +TPIEET
Sbjct:    8 KTDLRVSRLCLGC-MTFGEPDRGNHAWTLPEESSRPIIKRALEGGINFFDTANSYSDGSSEEIVGRALRDFA-RREDVVVATKVFHR-VGDLPEGLSRAQILRSIDDSLRRLGMDYVDILQIHRWDYNTPIEET 138          
BLAST of EY728232 vs. ExPASy Swiss-Prot
Match: YGHZ_ECOLI (Uncharacterized protein yghZ OS=Escherichia coli (strain K12) GN=yghZ PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.651e-13
Identity = 48/133 (36.09%), Postives = 76/133 (57.14%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYAN--GRAEEIMGQAIRE-LGWKRSDIVVSTKIFWG-GQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEETENS 472
            ++G R+  LS G   +FG+   +   +++L  + D GI  FD A  Y    G AEE  G+ +RE     R ++++STK  +    GP   G SRK+++     SLKR+ ++YVD+ Y HR D +TP+EET ++
Sbjct:   20 KSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASA 152          
BLAST of EY728232 vs. ExPASy Swiss-Prot
Match: YGHZ_ECO57 (Uncharacterized protein yghZ OS=Escherichia coli O157:H7 GN=yghZ PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.651e-13
Identity = 48/133 (36.09%), Postives = 76/133 (57.14%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYAN--GRAEEIMGQAIRE-LGWKRSDIVVSTKIFWG-GQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEETENS 472
            ++G R+  LS G   +FG+   +   +++L  + D GI  FD A  Y    G AEE  G+ +RE     R ++++STK  +    GP   G SRK+++     SLKR+ ++YVD+ Y HR D +TP+EET ++
Sbjct:   20 KSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASA 152          
The following BLAST results are available for this feature:
BLAST of EY728232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
KCAB1_HUMAN4.620e-3248.80Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_BOVIN4.620e-3248.80Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_CHICK6.034e-3248.00Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB3_RAT1.344e-3148.80Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB3_XENLA2.995e-3146.21Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB_SCHPO1.138e-3047.65Putative voltage-gated potassium channel subunit b... [more]
KCAB3_HUMAN1.138e-3047.20Voltage-gated potassium channel subunit beta-3 OS=... [more]
YAJO_ECOLI1.105e-1741.04Uncharacterized oxidoreductase yajO OS=Escherichia... [more]
YGHZ_ECOLI1.651e-1336.09Uncharacterized protein yghZ OS=Escherichia coli (... [more]
YGHZ_ECO571.651e-1336.09Uncharacterized protein yghZ OS=Escherichia coli O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-B10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728232 ID=EY728232; Name=EY728232; organism=Citrus sinensis; type=EST; length=921bp
CCACGCGTCCGCCAAAATCGATTCCCCCCTCTCTTTCTACTGAAACCCTA
AATCTAAAATCAGAGCCAAGGAAATATTGATTCAAGAAACGGGGCCGAGA
GTGAGCCAGCTCTCGTACGGAGCGTGAGTCAGCTTCGGGAACCAGCTGGA
CGTGACGGAGGCGAAGTCGCTCTTGCATTGCTCCCGCGACCACGGCATCA
ACTTCTTCGACAATGCCGAGGTCTACGCCAACGGCCGCGCGGAAGAGATC
ATGGGCCAGGCCATTCGTGAGCTCGGGTGGAAGCGATCCGACATCGTCGT
TTCCACCAAGATCTTTTGGGGCGGCCAGGGCCCCAACGATAAAGGCCTCT
CCAGAAAACACATCGTCAAGGGCACCAAAGCTTCCTTGAAACGCCTCGAC
ATGGACTACGTCGACGTTATTTATTGTCACAGGCCAGACACATCGACACC
GATAGAGGAGACGGAAAATTCCAAGGGATTTGACAGAGGCATCACTATCT
GGTGCAGGATAATCCATAATATCAGCCCTTTCTATGTTGTTTTTATTTGG
AATGGAACTAAATAATTATTTAACAGTGACCACCTCTACAGCTGTCATTG
TCGACAAGAGTACTGATGGGGACTTCTTGCCTATTGATTTTAATATGAGT
TTTCCCTCACTTTCATGTGAATTTGCATCAATAGACGTGAGTGACGTGTT
GGGAACTGTATCCTATTCTAGCTGTCAATTTTATGCTCCATGGTGCTACT
GGAGTAAACGCTGAACCATCATGGGAGAAGCAGCCAAAACATGAGAGAGT
ATGATCCGAAATGGATGACGTATCTTTTGGCAAGTTGATTGCCTGAANAA
TCGAGTGTGTANGAGCATCTATCAGTGTATCATCTATCGCATATCTGCAA
GGAGTGATGTAGGATGCTACA
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