EY728207

Overview
NameEY728207
Unique NameEY728207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1030
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728207 vs. ExPASy Swiss-Prot
Match: LCLT1_DANRE (Lysocardiolipin acyltransferase 1 OS=Danio rerio GN=lclat1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.069e-11
Identity = 38/121 (31.40%), Postives = 59/121 (48.76%), Query Frame = 3
Query:   33 HHKSDIDWLVGWVLSQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWVKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIPRTKGFVSAV 395
            +H++ +DW+  W    R   L      +K + K +P  GW+M  + ++F++R W  D + + + LQ      +P  L LF EGT  T+     + E+A   GL     VL PRT GF   V
Sbjct:   84 NHRTRLDWMFLWCCLLRYSYLRQEKICLKAALKSVPGFGWAMQVASFIFIQRRWEDDRTHMSNMLQYFCRIREPVQLLLFPEGTDLTENTRARSDEFAEKNGLQKYEYVLHPRTTGFTFIV 204          
BLAST of EY728207 vs. ExPASy Swiss-Prot
Match: LCLT1_MOUSE (Lysocardiolipin acyltransferase 1 OS=Mus musculus GN=Lclat1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.442e-11
Identity = 36/121 (29.75%), Postives = 57/121 (47.11%), Query Frame = 3
Query:   33 HHKSDIDWLVGWVLSQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWVKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIPRTKGFVSAV 395
            +H++ +DW+  W    R   L      +K S K +P  GW+M  + ++F+ R W  D+S  +  +       +P  L +F EGT  T+     + ++A   GL     VL PRT GF   V
Sbjct:   84 NHRTRVDWMFLWNCLMRYSYLRVEKICLKSSLKSVPGFGWAMQVAAFIFIHRKWKDDKSHFEDMIDYFCAIHEPLQLLIFPEGTDLTENNKARSNDFAEKNGLQKYEYVLHPRTTGFTFVV 204          

HSP 2 Score: 22.3274 bits (46), Expect = 1.442e-11
Identity = 10/35 (28.57%), Postives = 18/35 (51.43%), Query Frame = 1
Query:  421 AIYDVTVAIPKSSPAPYMIRLFRGQSSVMHVHLKK 525
            A++D+TVA P + P      L       +H H+++
Sbjct:  215 AVHDITVAYPYNIPQTEKHLLLGDFPKEIHFHVQR 249          
BLAST of EY728207 vs. ExPASy Swiss-Prot
Match: LCLT1_HUMAN (Lysocardiolipin acyltransferase 1 OS=Homo sapiens GN=LCLAT1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.110e-11
Identity = 38/121 (31.40%), Postives = 57/121 (47.11%), Query Frame = 3
Query:   33 HHKSDIDWLVGWVLSQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWVKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIPRTKGFVSAV 395
            +H++ +DW+  W    R   L      +K S K +P  GW+M  + Y+F+ R W  D+S  +  +    D  +P  L +F EGT  T+     +  +A   GL     VL PRT GF   V
Sbjct:  122 NHRTRMDWMFLWNCLMRYSYLRLEKICLKASLKGVPGFGWAMQAAAYIFIHRKWKDDKSHFEDMIDYFCDIHEPLQLLIFPEGTDLTENSKSRSNAFAEKNGLQKYEYVLHPRTTGFTFVV 242          
The following BLAST results are available for this feature:
BLAST of EY728207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
LCLT1_DANRE1.069e-1131.40Lysocardiolipin acyltransferase 1 OS=Danio rerio G... [more]
LCLT1_MOUSE1.442e-1129.75Lysocardiolipin acyltransferase 1 OS=Mus musculus ... [more]
LCLT1_HUMAN3.110e-1131.40Lysocardiolipin acyltransferase 1 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-108-H03-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728207 ID=EY728207; Name=EY728207; organism=Citrus sinensis; type=EST; length=1030bp
CCACGCGTCCGAGAACATGCACTTGTTGTTTCCATCACAAAAGTGACATT
GACTGGCTTGTTGGGTGGGTTTTGTCTCAGCGGTCAGGTTGTCTTGGTAG
CACATTGGCCGTTATGAAGAAATCATCAAAATTTCTTCCGGTCATAGGTT
GGTCAATGTGGTTTTCTGAGTATCTCTTTCTGGAAAGAAACTGGGTAAAG
GATGAGAGCACATTAAAGTCAGGTCTCCAACGTCTAAGAGACTACCCTCA
ACCCTTTTGGCTAGCTCTCTTTGTAGAAGGAACTCGATTTACACAGGCTA
AGCTTTTAGCAGCTCAGGAATATGCTGCTTCAACAGGATTGCCTATTCCT
AGAAATGTTTTAATTCCTCGTACTAAGGGATTTGTTTCAGCAGTGAGTCA
TAATGCGCTCATTTGTCCCAGCCATTTACGATGTAACAGTAGCCATTCCT
AAGAGTTCACCTGCACCCTACATGATCAGACTCTTCAGGGGCCAATCTTC
TGTGATGCACGTGCACCTCAAAAAGGCATTTTGATGAAGGAAATTGCCTG
AAAACAAATGAGGCTGGTGCACAATGGGGTAAAGATATGGTTCGGGGCCC
AAGGATGGCACTTTGGGAAAAAACTAAATGGCAAAAAAAACCTTTTTAAG
GGAACCCAAAAATTGCGGGGAAATTTCCCCGGGCCAAAAAAAACCACTTT
CGGGGGCCTTTTTATCTTCCCGGGGGCATCTTCGGGAAAAAATATTTTGG
GGGGTTTTTGAAAATTTTCTTTCTGGGGGGTTTTCCCATTTTTTTTCCCC
CCAGTGGGAAGGGGGGTTTTTGTCATTTTTTCCGGGTTTTTGGGGCTTGG
GGGAATATGGCCCCCCCGTTTTTTGGAAGGGAAAAATTATTTTAATTTTT
GCTTTTTTTCTCCAAAATTAAAAAAAGGATTTTTTCTTTCCCCCCCCCCG
GGGGCGAAGGGGAGTGTTTGCCCCTCCTCTTCTCCCTAAACGCCCCCCCC
CCCAATAGATTAGCATAAAAGGGAAGAGAC
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