EY727858

Overview
NameEY727858
Unique NameEY727858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY727858 vs. ExPASy Swiss-Prot
Match: ACP3_HORVU (Acyl carrier protein 3, chloroplastic OS=Hordeum vulgare GN=ACL1.3 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 8.788e-20
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 1
Query:  232 LRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEE 447
            LR++  P RF V C+AK +TV+KVC+IVKKQLA+P  T V G +KF+ LGADSLDTVEIVMGLEEEF ISVEE
Sbjct:   35 LRLQPVPMRFAVCCSAKQDTVEKVCEIVKKQLAVPEGTEVCGTTKFSDLGADSLDTVEIVMGLEEEFQISVEE 107          
BLAST of EY727858 vs. ExPASy Swiss-Prot
Match: ACP_BRACM (Acyl carrier protein SF2, chloroplastic OS=Brassica campestris GN=Acl1.1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.148e-19
Identity = 51/75 (68.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  229 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEEK 453
            +LR     RF +SCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGLEEEF I + EEK
Sbjct:   38 NLRRSIPTRFSISCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEK 112          
BLAST of EY727858 vs. ExPASy Swiss-Prot
Match: ACP2_SPIOL (Acyl carrier protein 2, chloroplastic OS=Spinacia oleracea GN=ACL1.2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.478e-19
Identity = 59/116 (50.86%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  106 MASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPR-FRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEE 450
            MAS+TG+S    S  C+  Q+                +  P +     PR   VSCAAKPE V KV  IVK QLAL  D  VTGE+KF+ +GADSLDTVEIVM LEEEFG++VEEE
Sbjct:    1 MASITGSSV---SFKCAPLQSSFNSKNYALKSSVTFWRRTPVM-----PRGLSVSCAAKPEMVTKVSDIVKSQLALAEDAKVTGETKFSEIGADSLDTVEIVMKLEEEFGVTVEEE 108          

HSP 2 Score: 22.7126 bits (47), Expect = 3.478e-19
Identity = 8/18 (44.44%), Postives = 16/18 (88.89%), Query Frame = 2
Query:  431 GSALKKKSAQTISTVQDA 484
            G  +++++AQTI+T+Q+A
Sbjct:  102 GVTVEEENAQTITTIQEA 119          
BLAST of EY727858 vs. ExPASy Swiss-Prot
Match: ACP2_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.361e-19
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  229 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEEK 453
            +LR     R  VSCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGLEEEF I + EEK
Sbjct:   38 NLRRSIPTRLSVSCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEK 112          
BLAST of EY727858 vs. ExPASy Swiss-Prot
Match: ACP3_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.696e-19
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  229 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEEK 453
            +LR     R  VSCAAKPET++KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGLEEEF I + EEK
Sbjct:   38 NLRRSIPTRLSVSCAAKPETIEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEK 112          
BLAST of EY727858 vs. ExPASy Swiss-Prot
Match: ACP1_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.696e-19
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 1
Query:  241 RSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEEK 453
            RS P R  VSCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGLEEEF I + EEK
Sbjct:   41 RSIPTRLSVSCAAKPETVEKVSKIVKKQLSLKDDQNVVAETKFADLGADSLDTVEIVMGLEEEFHIEMAEEK 112          
BLAST of EY727858 vs. ExPASy Swiss-Prot
Match: ACP1_ARATH (Acyl carrier protein 1, chloroplastic OS=Arabidopsis thaliana GN=ACP-1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.657e-18
Identity = 56/115 (48.70%), Postives = 70/115 (60.87%), Query Frame = 1
Query:  109 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEEK 453
            ASV+  ++C+ +   SF++                 +S PS R+       VSCAAK ET++KV  IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGLEEEF I + EEK
Sbjct:    7 ASVSLQTSCLATTRISFQKPALISNHGKTNLSFNLRRSIPSRRLS------VSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEK 115          
BLAST of EY727858 vs. ExPASy Swiss-Prot
Match: ACP5_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.C1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.827e-18
Identity = 48/70 (68.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  244 SAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEEK 453
            S  R  +SCAAK ETV+KV +IVKKQL+L  D  V  E+KF  LGADSLDTVEIVMGLEEEFGI + EEK
Sbjct:   43 SRTRLSISCAAKQETVEKVSEIVKKQLSLKDDQQVVAETKFVDLGADSLDTVEIVMGLEEEFGIQMAEEK 112          
The following BLAST results are available for this feature:
BLAST of EY727858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ACP3_HORVU8.788e-2069.86Acyl carrier protein 3, chloroplastic OS=Hordeum v... [more]
ACP_BRACM1.148e-1968.00Acyl carrier protein SF2, chloroplastic OS=Brassic... [more]
ACP2_SPIOL3.478e-1950.86Acyl carrier protein 2, chloroplastic OS=Spinacia ... [more]
ACP2_BRANA4.361e-1968.00Acyl carrier protein, chloroplastic OS=Brassica na... [more]
ACP3_BRANA5.696e-1966.67Acyl carrier protein, chloroplastic OS=Brassica na... [more]
ACP1_BRANA5.696e-1972.22Acyl carrier protein, chloroplastic OS=Brassica na... [more]
ACP1_ARATH1.657e-1848.70Acyl carrier protein 1, chloroplastic OS=Arabidops... [more]
ACP5_BRANA2.827e-1868.57Acyl carrier protein, chloroplastic OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-106-E07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY727858 ID=EY727858; Name=EY727858; organism=Citrus sinensis; type=EST; length=897bp
CTCTCAGTCTCAGACACACATTACATAGCACGCAGTCTTCGTGCTCTTCG
TCGTCCTCTCTCTCGCTCTCTCTCTTTTCAACTTCAAATCTCAGATCTCT
ATTCAATGGCTTCAGTTACAGGAACTTCAGCCTGCATGACCTCTCTGTCT
TGCTCTTTCAAGCAGACCCAGGGTAGGATCTCTAGTGTGAATTCAGTTTC
ACTTTCCATCAATGGGAAAAGCTTCCCATCCCTTAGAATGCGATCAGCAC
CCCGCTTCCGGGTTTCCTGTGCGGCCAAGCCAGAGACCGTGGATAAGGTT
TGTCAAATTGTGAAGAAGCAGTTGGCACTCCCAGCAGATACTACCGTTAC
CGGAGAGTCAAAATTCGCTGCCCTTGGAGCTGATTCTCTTGATACGGTTG
AGATTGTGATGGGACTGGAGGAGGAATTTGGGATCAGCGTTGAAGAAGAA
AAGTGCCCAGACCATCTCAACCGTTCAAGATGCCTGCAAATCTGATTGAG
AAGCTCATTGAAACCAAGAGTGCTTAATTTAAAAGGGTCTGGGAAAAGAG
CCGGGGCTTAAGGGACTTAATTCGCCTAGTTTCCTTTTTCCAATCTTTTT
GTTGGGCTGTCCCCAGGGAGTTTTCCAGCTTTGTTTTGGGAAATTTGGTC
AGGGGTTTTTTTCCTATTCTGGTTGTTCCCTTTCTATAAAAAAAAAACTC
CATTTAAACCAGTTTTGGCTTTGGGGAAATCAACCCAAAAAACTGGTTCC
CGTTTTTTCGGGGGTGGGGGAACCCCGGGTTATTCCCGGTTTCCCAAAAA
AATTCCCATTCCAGGGGGGGAAAAAAACAATTTTTTTTTTTGGGGGCCAC
GAAAAGTATTAGAGAAAAAAAAAAGAAAGAAAAAAATAAGAAAGACA
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