EY727852

Overview
NameEY727852
Unique NameEY727852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1002
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: LCF4_YEAST (Long-chain-fatty-acid--CoA ligase 4 OS=Saccharomyces cerevisiae GN=FAA4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.106e-13
Identity = 52/153 (33.99%), Postives = 79/153 (51.63%), Query Frame = 3
Query:   51 GCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRW------------------KITSFADVQILGRE--NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAV 449
            GC  + + VVT Y +LGE  L +S+ ET+   +   ++ L KL   +  L T K+V  +  N P   S   Q+G+                   KI SF ++  +G++  + V+  +P   D A IMYTSGSTG PKGV++TH N++A +  V
Sbjct:  145 GCMSQGIPVVTAYDTLGESGLIHSMVETDSVAIFTDNQLLSKL---AVPLKTAKNVKFVIHNEPIDPSDKRQNGKLYKAAKDAVDKIKEVRPDIKIYSFDEIIEIGKKAKDEVELHFPKPEDPACIMYTSGSTGTPKGVVLTHYNIVAGIGGV 294          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: LCF2_SCHPO (Long-chain-fatty-acid--CoA ligase 2 OS=Schizosaccharomyces pombe GN=SPBP4H10.11c PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.887e-13
Identity = 43/139 (30.94%), Postives = 73/139 (52.52%), Query Frame = 3
Query:   48 QGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR-WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAVMTIV 461
            QGC  + + +VT Y +LGE+ +  SL+E +   +      + KL+    Q   VK ++C        V  V+ +    +I ++ ++  LG+E P     P + D+   MYTSGSTG PKGV++ H N++A +  +  I+
Sbjct:  143 QGCSSQAIPIVTAYETLGEDGIYTSLDECKSRAIFTDPNLIPKLLGPLKQSTWVKLIVCSSTPSEDLVELVKSTAPDVEIITYDNLLSLGKEKPQPPHPPKADDICCYMYTSGSTGKPKGVVLLHRNIIAALGGINRIL 281          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: ACSL1_MOUSE (Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.489e-13
Identity = 46/132 (34.85%), Postives = 75/132 (56.82%), Query Frame = 3
Query:   48 QGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV----KHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 431
            QGCF  ++ VV +Y +LG +A+ Y +N+ E++ +     E  KL+ L G  + +    K ++ MD+     V   ++ G  +I S   ++ LGR N V    P   D+A+I +TSG+TG PKG M+TH N++
Sbjct:  166 QGCFSYSMVVVPLYDTLGADAITYIVNKAELSVIFADKPEKAKLL-LEGVENKLTPCLKIIVIMDSYGSDLVERGKKCGV-EIISLKALEDLGRVNRVKPKPPEPEDLAIICFTSGTTGNPKGAMITHQNII 295          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: FCSB_DICDI (Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.169e-13
Identity = 45/157 (28.66%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   57 FRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADY----PVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAVMTIVPDLGSKDVYFGIPYLWLL 515
            F ++  VV+ Y +LG E+L Y     E+    C ++ L+K +D++  +  +K +IC D+      +  ++ G   +T +   +I+ +    +  +    P    ++ IMYTSG+TG PKGVM+TH N+ + V AV   +    +   Y  +PY  +L
Sbjct:  144 FIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDIAKGVKVLKTIICFDSIDKEHYNIAKELG---VTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGVMITHKNLTSVVCAVSDFIKVYDTDVHYSYLPYAHVL 297          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: ACSL5_RAT (Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.724e-12
Identity = 43/136 (31.62%), Postives = 77/136 (56.62%), Query Frame = 3
Query:   54 CFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDT---VKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAVM 452
            C+  ++  V +Y +LG EA+ Y +N  +++ VIC + +   ++  + + D    +K VI MD      +   E+ G  ++ S  D + LG+EN      P   D++VI +TSG+TG PKG M+TH N+++ ++A +
Sbjct:  152 CYTYSMVAVPLYDTLGAEAIIYVINRADISVVICDTPQKATMLIENVEKDLTPGLKTVILMDPFDDDLMKRGEKCGI-EMLSLHDAENLGKENFKKPMPPNPEDLSVICFTSGTTGDPKGAMLTHQNIVSNMAAFL 286          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: ACSL1_RAT (Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.558e-12
Identity = 44/132 (33.33%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   48 QGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV----KHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 431
            QGCF  ++ VV +Y +LG +A+ Y +N+ E++ +     E  KL+ L G  + +    K ++ MD+     V   ++ G  +I     ++ LGR N      P   D+A+I +TSG+TG PKG M+TH N++
Sbjct:  166 QGCFTYSMVVVPLYDTLGTDAITYIVNKAELSVIFADKPEKAKLL-LEGVENKLTPCLKIIVIMDSYDNDLVERGQKCGV-EIIGLKALEDLGRVNRTKPKPPEPEDLAIICFTSGTTGNPKGAMVTHQNIM 295          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: ACSL1_CAVPO (Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.927e-12
Identity = 44/136 (32.35%), Postives = 76/136 (55.88%), Query Frame = 3
Query:   48 QGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLV--DLSGQLDT-VKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSA 446
            Q CF  ++ VV +Y +LG +A+ Y +N+ E++ +     E  +++   +  +L   +K ++ MD+     V   ++ G  ++ S   ++ LGR N      P   D+AVI +TSG+TG PKG M+TH NV++  SA
Sbjct:  165 QACFAYSMVVVPLYDTLGADAITYIVNKAELSVIFADKPEKARILLESVENKLTPGLKIIVVMDSYGSELVEQGKKCGV-EVISLKAMEGLGRANRRKPKPPEPDDLAVICFTSGTTGNPKGAMITHKNVVSDCSA 299          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: ACSL5_HUMAN (Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.352e-11
Identity = 45/141 (31.91%), Postives = 79/141 (56.03%), Query Frame = 3
Query:   54 CFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLD-----TVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAVMTIV 461
            C+  ++  V +Y +LG EA+ + +N+ ++  VIC + +  K + L G ++     ++K +I MD          E+SG  +I S  D + LG+E+      P   D++VI +TSG+TG PKG M+TH N+++  +A +  V
Sbjct:  152 CYTYSMVAVPLYDTLGPEAIVHIVNKADIAMVICDTPQ--KALVLIGNVEKGFTPSLKVIILMDPFDDDLKQRGEKSGI-EILSLYDAENLGKEHFRKPVPPSPEDLSVICFTSGTTGDPKGAMITHQNIVSNAAAFLKCV 289          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: LCF1_YEAST (Long-chain-fatty-acid--CoA ligase 1 OS=Saccharomyces cerevisiae GN=FAA1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.766e-11
Identity = 55/167 (32.93%), Postives = 82/167 (49.10%), Query Frame = 3
Query:   51 GCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVE--QSGRW------------------KITSFADVQILGRE--NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPV-SAVMTIVPDLGSKD 482
            G   + + VVT Y +LGE+ L +SL +T    +   +  L  L+        VK++I  D+     +SS +  QSG+                   K  SF D+  LG+E  N +D   P   D+  IMYTSGSTG PKGV++ H NV+A V  A + ++  +G+ D
Sbjct:  145 GAQSQGIPVVTAYDTLGEKGLIHSLVQTGSKAIFTDNSLLPSLIKPVQAAQDVKYIIHFDS-----ISSEDRRQSGKIYQSAHDAINRIKEVRPDIKTFSFDDILKLGKESCNEIDVHPPGKDDLCCIMYTSGSTGEPKGVVLKHSNVVAGVGGASLNVLKFVGNTD 306          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: ACSL5_MOUSE (Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.012e-11
Identity = 41/136 (30.15%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   54 CFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLS---GQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAVM 452
            C+  ++  V +Y +LG EA+ + +N  ++  VIC + +   ++  +   G    +K +I MD      +   E+ G  ++ S  D + +G+EN      P   D++VI +TSG+TG PKG M+TH NV++ ++A +
Sbjct:  152 CYTYSMVAVPLYDTLGTEAIIFVINRADIPVVICDTPQKATMLVENVEKGLTPGLKTIILMDPFDDDLMKRGEKCGV-EMLSLHDAENIGKENFKKPVPPKPEDLSVICFTSGTTGDPKGAMLTHENVVSNMAAFL 286          
The following BLAST results are available for this feature:
BLAST of EY727852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
LCF4_YEAST1.106e-1333.99Long-chain-fatty-acid--CoA ligase 4 OS=Saccharomyc... [more]
LCF2_SCHPO1.887e-1330.94Long-chain-fatty-acid--CoA ligase 2 OS=Schizosacch... [more]
ACSL1_MOUSE5.489e-1334.85Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculu... [more]
FCSB_DICDI7.169e-1328.66Fatty acyl-CoA synthetase B OS=Dictyostelium disco... [more]
ACSL5_RAT2.724e-1231.62Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norv... [more]
ACSL1_RAT3.558e-1233.33Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norv... [more]
ACSL1_CAVPO7.927e-1232.35Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porce... [more]
ACSL5_HUMAN1.352e-1131.91Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapien... [more]
LCF1_YEAST1.766e-1132.93Long-chain-fatty-acid--CoA ligase 1 OS=Saccharomyc... [more]
ACSL5_MOUSE3.012e-1130.15Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-106-E01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY727852 ID=EY727852; Name=EY727852; organism=Citrus sinensis; type=EST; length=1002bp
GGGCGGGTCCGGGTCCGGGAATTCCGGGTCGACCCCGCGTCCGATTGCAG
GGTTGCTTCAGACGCAATGTCACAGTGGTGACCATATATGCATCCTTAGG
GGAGGAAGCACTGTGCTATTCTTTGAATGAGACCGAGGTTACAACTGTGA
TTTGTGGGAGCAAAGAACTGAAAAAGTTGGTAGACTTAAGTGGACAACTT
GACACTGTGAAACATGTGATATGTATGGACGCTAATATTCCATCTGCTGT
CTCATCAGTTGAGCAGAGTGGTCGCTGGAAGATCACTTCGTTTGCTGATG
TGCAGATTCTTGGCAGAGAAAATCCTGTTGATGCTGACTATCCTGTTTCA
GCTGATGTTGCAGTTATAATGTATACAAGTGGAAGTACTGGTTTGCCCAA
GGGTGTAATGATGACACACGGCAATGTCTTAGCCCCAGTTTCTGCAGTCA
TGACAATTGTTCCTGACCTGGGAAGCAAGGATGTTTATTTTGGCATACCC
TACCTCTGGCTCCTGTTCTGGAATTAGTACCTGAAAACCTAATTTGCTGG
GGGTTGGAACCCCAATAGGAATGGGTACCCCTTTTGACTCCCACTGATAC
CCTCAACCAAATTAAAAAAGGGAACCCAGGGGAAAGCATCTGTTTTGGGG
GCAAGTGATGAGGCCCTCTGTCCCAAAAAAAAGCCACAGAGGGAAACAAA
AGGGAGGAGACAGAAAAAGGAATGCGAAAAGGGGGGCTTTAACAGCAGAA
GTGATAGTCAAATGCCGAAATGACCCAGAACACAGATCGAAAAGAAAAGG
GAAAAGCCGAGACGGACGGCCATGAGACCCGGAACACAACCGATAGTGGG
AGATCCACCCTGAGTGATTTGACCAAAGTCTCAAATGGTCGATACAACGG
CAAAGAAAGAAAAATACAGTGACATATATACTATTCAAAAGGAAGAGACA
TCTATGATTTCATAAGACAAGGATCAAGCCAGCGTAAGAATATAAACAGA
CA
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