EY727852

Overview
NameEY727852
Unique NameEY727852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1002
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: LCF3_YEAST (Long-chain-fatty-acid--CoA ligase 3 OS=Saccharomyces cerevisiae GN=FAA3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.710e-11
Identity = 47/153 (30.72%), Postives = 76/153 (49.67%), Query Frame = 3 
Query:   51 GCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRW------------------KITSFADVQILGRENP--VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAV 449
            GC  + + VVT Y +LGE  L +S+ ETE   +   ++ L K++     L + K +  +  N P   +   Q+G+                   KI SF +V  +G+++   V    P   D+A IMYTSGS   PKGV++TH N+++ ++ V
Sbjct:  145 GCISQGIPVVTAYDTLGESGLIHSMVETESAAIFTDNQLLAKMIV---PLQSAKDIKFLIHNEPIDPNDRRQNGKLYKAAKDAINKIREVRPDIKIYSFEEVVKIGKKSKDEVKLHPPEPKDLACIMYTSGSISAPKGVVLTHYNIVSGIAGV 294
The following BLAST results are available for this feature:
BLAST of EY727852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
LCF3_YEAST6.710e-1130.72Long-chain-fatty-acid--CoA ligase 3 OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-106-E01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY727852 ID=EY727852; Name=EY727852; organism=Citrus sinensis; type=EST; length=1002bp
GGGCGGGTCCGGGTCCGGGAATTCCGGGTCGACCCCGCGTCCGATTGCAG
GGTTGCTTCAGACGCAATGTCACAGTGGTGACCATATATGCATCCTTAGG
GGAGGAAGCACTGTGCTATTCTTTGAATGAGACCGAGGTTACAACTGTGA
TTTGTGGGAGCAAAGAACTGAAAAAGTTGGTAGACTTAAGTGGACAACTT
GACACTGTGAAACATGTGATATGTATGGACGCTAATATTCCATCTGCTGT
CTCATCAGTTGAGCAGAGTGGTCGCTGGAAGATCACTTCGTTTGCTGATG
TGCAGATTCTTGGCAGAGAAAATCCTGTTGATGCTGACTATCCTGTTTCA
GCTGATGTTGCAGTTATAATGTATACAAGTGGAAGTACTGGTTTGCCCAA
GGGTGTAATGATGACACACGGCAATGTCTTAGCCCCAGTTTCTGCAGTCA
TGACAATTGTTCCTGACCTGGGAAGCAAGGATGTTTATTTTGGCATACCC
TACCTCTGGCTCCTGTTCTGGAATTAGTACCTGAAAACCTAATTTGCTGG
GGGTTGGAACCCCAATAGGAATGGGTACCCCTTTTGACTCCCACTGATAC
CCTCAACCAAATTAAAAAAGGGAACCCAGGGGAAAGCATCTGTTTTGGGG
GCAAGTGATGAGGCCCTCTGTCCCAAAAAAAAGCCACAGAGGGAAACAAA
AGGGAGGAGACAGAAAAAGGAATGCGAAAAGGGGGGCTTTAACAGCAGAA
GTGATAGTCAAATGCCGAAATGACCCAGAACACAGATCGAAAAGAAAAGG
GAAAAGCCGAGACGGACGGCCATGAGACCCGGAACACAACCGATAGTGGG
AGATCCACCCTGAGTGATTTGACCAAAGTCTCAAATGGTCGATACAACGG
CAAAGAAAGAAAAATACAGTGACATATATACTATTCAAAAGGAAGAGACA
TCTATGATTTCATAAGACAAGGATCAAGCCAGCGTAAGAATATAAACAGA
CA
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