EY754042 | Citrus Genome Database

Overview


Name	EY754042
Unique Name	EY754042
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	882

Libraries


Library Name	Type
Sweet orange leaf, field plant A	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_MOUSE (Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.464e-12
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  +    M     E+                   +++AF V  KD +G IS  EL  V+  LG
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEE------------------EIREAFRVFDKDGNGYISAAELRHVMTNLG 114

HSP 2 Score: 24.2534 bits (51), Expect = 2.464e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  + GDG+V  EEF
Sbjct:  123 DEMIREADIDGDGQVNYEEF 142

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_METSE (Calmodulin OS=Metridium senile PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.464e-12
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  +    M     E+                   +++AF V  KD +G IS  EL  V+  LG
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEE------------------EIREAFRVFDKDGNGFISAAELRHVMTNLG 114

HSP 2 Score: 24.2534 bits (51), Expect = 2.464e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  + GDG+V  EEF
Sbjct:  123 DEMIREADIDGDGQVNYEEF 142

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_LUMRU (Calmodulin OS=Lumbricus rubellus PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.464e-12
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  +    M     E+                   +++AF V  KD +G IS  EL  V+  LG
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEE------------------EIREAFRVFDKDGNGFISAAELRHVMTNLG 114

HSP 2 Score: 24.2534 bits (51), Expect = 2.464e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  + GDG+V  EEF
Sbjct:  123 DEMIREADIDGDGQVNYEEF 142

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_LOCMI (Calmodulin OS=Locusta migratoria PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.464e-12
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  +    M     E+                   +++AF V  KD +G IS  EL  V+  LG
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEE------------------EIREAFRVFDKDGNGFISAAELRHVMTNLG 114

HSP 2 Score: 24.2534 bits (51), Expect = 2.464e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  + GDG+V  EEF
Sbjct:  123 DEMIREADIDGDGQVNYEEF 142

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_HUMAN (Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.464e-12
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  +    M     E+                   +++AF V  KD +G IS  EL  V+  LG
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEE------------------EIREAFRVFDKDGNGYISAAELRHVMTNLG 114

HSP 2 Score: 24.2534 bits (51), Expect = 2.464e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  + GDG+V  EEF
Sbjct:  123 DEMIREADIDGDGQVNYEEF 142

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_GECJA (Calmodulin OS=Gecko japonicus GN=GekBS194P PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.464e-12
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  +    M     E+                   +++AF V  KD +G IS  EL  V+  LG
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEE------------------EIREAFRVFDKDGNGYISAAELRHVMTNLG 114

HSP 2 Score: 24.2534 bits (51), Expect = 2.464e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  + GDG+V  EEF
Sbjct:  123 DEMIREADIDGDGQVNYEEF 142

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_EPIAK (Calmodulin OS=Epinephelus akaara GN=calm PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.464e-12
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  +    M     E+                   +++AF V  KD +G IS  EL  V+  LG
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEE------------------EIREAFRVFDKDGNGYISAAELRHVMTNLG 114

HSP 2 Score: 24.2534 bits (51), Expect = 2.464e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  + GDG+V  EEF
Sbjct:  123 DEMIREADIDGDGQVNYEEF 142

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_ELEEL (Calmodulin OS=Electrophorus electricus GN=calm PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.464e-12
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  +    M     E+                   +++AF V  KD +G IS  EL  V+  LG
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAKKMKDTDSEE------------------EIREAFRVFDKDGNGYISAAELRHVMTNLG 114

HSP 2 Score: 24.2534 bits (51), Expect = 2.464e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  + GDG+V  EEF
Sbjct:  123 DEMIREADIDGDGQVNYEEF 142

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_DROME (Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.464e-12
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  +    M     E+                   +++AF V  KD +G IS  EL  V+  LG
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEE------------------EIREAFRVFDKDGNGFISAAELRHVMTNLG 114

HSP 2 Score: 24.2534 bits (51), Expect = 2.464e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  + GDG+V  EEF
Sbjct:  123 DEMIREADIDGDGQVNYEEF 142

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_DANRE (Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.464e-12
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  +    M     E+                   +++AF V  KD +G IS  EL  V+  LG
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEE------------------EIREAFRVFDKDGNGYISAAELRHVMTNLG 114

HSP 2 Score: 24.2534 bits (51), Expect = 2.464e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  + GDG+V  EEF
Sbjct:  123 DEMIREADIDGDGQVNYEEF 142

The following BLAST results are available for this feature:

BLAST of EY754042 vs. ExPASy Swiss-Prot

BLAST of EY754042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123


Match Name	E-value	Identity	Description
CALM_MOUSE	2.464e-12	36.07	Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2	[more]
CALM_METSE	2.464e-12	36.07	Calmodulin OS=Metridium senile PE=1 SV=3	[more]
CALM_LUMRU	2.464e-12	36.07	Calmodulin OS=Lumbricus rubellus PE=2 SV=3	[more]
CALM_LOCMI	2.464e-12	36.07	Calmodulin OS=Locusta migratoria PE=1 SV=2	[more]
CALM_HUMAN	2.464e-12	36.07	Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2	[more]
CALM_GECJA	2.464e-12	36.07	Calmodulin OS=Gecko japonicus GN=GekBS194P PE=2 SV...	[more]
CALM_EPIAK	2.464e-12	36.07	Calmodulin OS=Epinephelus akaara GN=calm PE=2 SV=3	[more]
CALM_ELEEL	2.464e-12	36.07	Calmodulin OS=Electrophorus electricus GN=calm PE=...	[more]
CALM_DROME	2.464e-12	36.07	Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 ...	[more]
CALM_DANRE	2.464e-12	36.07	Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	CS12-C1-001-010-A04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY754042 ID=EY754042; Name=EY754042; organism=Citrus sinensis; type=EST; length=882bp
CCAGCGTNNCGATCGACTACACACTAGCTAGNTAATTGGGTTCCCCTTAA
TTGCCTCTGTTAACATCTCTCCTTTGTTGCTCTGAGGTAACAAAGAAGAT
GGTGATATCGATATTGTTATTAGCAGTTCTGTTCATTGCCGGCTTCATTA
ATATTTTCTTTTACTTCCCCACCAAGAAGTTTTATGCGTGGATCCAGGGT
TTCTTCAGCAAAAAGGCTACTTCTACTAGTGAATCCCGAGTTTCGTCGCC
AAGCCAAGAGACGAGTGCATACAAGAAAGCTGAGCTCAAGAGGGTATTTG
CGACTTTTGACAAAGACGGCGACGGATTCATAACAAAGACGGAGCTTGTA
GAGTCGCTACGGAACCTAAGGCTGATGGTTACCGACATGGAAGCCGAAGA
AATGGTTGCAAAAGTTGATGCTAATGGAGATGGGCTGATTGAGTTTGATG
AGTTTTGCATGTTGTACGAGGGCNTGATGGGTGGAGATCGCCAGGAAAAG
GGCGGCGCCGGAGATGGGGAAGGTGGTGGTGGTGGTGGTGCCCATGAAGG
CGATGATTTGAAGGATGCTTTTGATGTGTGTGGTAAAGATAAAGATGGGG
TGATTTCAGTGGAGGAGTTGGGGCTAGTGGTGGCTGCCTTAGGGGTTAAT
GAGGGGTACAGGTTGGAATTGGTGAATNGATGATTAGGAAAGGTGCCGTG
GGCGGGGATGGGAAGGTNATTNTGGAGGAGTTTGGGGGGGAGATGAAAGG
CGGGAGAAGGCCTCTTACAGGGCTTGGAGGTCCTGGGGTGCAGGTGTACT
GGGTGCGGAAGAGCAGATGGGGTTCGCCAAGGTGTAGGAGAGGGGGGGTA
GAAGGCTTGGGGGCACTAAAAAAAAGAAAGGA