EY754042 | Citrus Genome Database

Overview


Name	EY754042
Unique Name	EY754042
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	882

Libraries


Library Name	Type
Sweet orange leaf, field plant A	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALN_CHICK (Neo-calmodulin (Fragment) OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.225e-12
Identity = 43/121 (35.54%), Postives = 61/121 (50.41%), Query Frame = 3

Query:  282 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  +    M     E+                   +++AF V  KD +G IS  EL  V+  LG
Sbjct:    1 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEE------------------EIREAFRVFDKDSNGYISAAELRHVMTNLG 103

HSP 2 Score: 24.2534 bits (51), Expect = 4.225e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  + GDG+V  EEF
Sbjct:  112 DEMIREADIDGDGQVNYEEF 131

[Close]

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_STYLE (Calmodulin OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.399e-12
Identity = 45/122 (36.89%), Postives = 62/122 (50.82%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  L    M     E+                   L +AF V  +D +G+IS  EL  V+  LG
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEE------------------ELVEAFKVFDRDGNGLISAAELRHVMTNLG 114

HSP 2 Score: 23.483 bits (49), Expect = 5.399e-12
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  V GDG +  EEF
Sbjct:  123 DEMIREADVDGDGHINYEEF 142

[Close]

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM2_PETHY (Calmodulin-2 OS=Petunia hybrida GN=CAM72 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.399e-12
Identity = 44/122 (36.07%), Postives = 63/122 (51.64%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+++VDA+ +G I+F EF  L    M     E+                   LK+AF V  KD++G IS  ++  V+  LG
Sbjct:   11 AEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADQNGTIDFPEFLNLMARKMKDTDSEE------------------ELKEAFKVFDKDQNGYISAADVRHVMTNLG 114

HSP 2 Score: 23.483 bits (49), Expect = 5.399e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  + GDG+V  EEF
Sbjct:  123 DEMIREADMDGDGQVNYEEF 142

[Close]

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_TRYCR (Calmodulin OS=Trypanosoma cruzi GN=CALA2 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.399e-12
Identity = 44/122 (36.07%), Postives = 60/122 (49.18%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            +E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VD +G G I+F EF  L    M     E+                   +K+AF V  KD +G IS  EL  V+  LG
Sbjct:   11 SEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEE------------------EIKEAFRVFDKDGNGFISAAELRHVMTNLG 114

HSP 2 Score: 24.2534 bits (51), Expect = 5.399e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  V GDG++  EEF
Sbjct:  123 DEMIREADVDGDGQINYEEF 142

[Close]

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALMF_NAEGR (Calmodulin, flagellar OS=Naegleria gruberi GN=CAM1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 45/122 (36.89%), Postives = 63/122 (51.64%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT +EL   +R+L    T+ E  +M+ +VDA+G+G I+F EF  +    M     E+                   +K+AF V  KD +G IS +EL  V+  LG
Sbjct:   17 AEFKEAFSLFDKDGDGTITTSELGTVMRSLGQNPTEAELHDMINEVDADGNGTIDFTEFLTMMAKKMKDTDNEE------------------EIKEAFKVFDKDGNGFISAQELRHVMCNLG 120

[Close]

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_DICDI (Calmodulin OS=Dictyostelium discoideum GN=calA PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.999e-12
Identity = 44/122 (36.07%), Postives = 63/122 (51.64%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  +    M     E+                   +++AF V  KD +G IS  EL  V+ +LG
Sbjct:   13 AEFKEAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGNIDFPEFLTMMARKMQDTDTEE------------------EIREAFKVFDKDGNGYISAAELRHVMTSLG 116

HSP 2 Score: 22.3274 bits (46), Expect = 6.999e-12
Identity = 9/20 (45.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  + GDG+V  +EF
Sbjct:  125 DEMIREADLDGDGQVNYDEF 144

[Close]

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_PAXIN (Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 7.012e-12
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            +E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  +    M     E+                   +K+AF V  KD +G IS  EL  V+  LG
Sbjct:   11 SEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEGELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEE------------------EIKEAFKVFDKDGNGYISAAELRHVMTNLG 114

HSP 2 Score: 23.0978 bits (48), Expect = 7.012e-12
Identity = 9/20 (45.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  V GDG++  +EF
Sbjct:  123 DEMIREADVDGDGQINYDEF 142

[Close]

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_TRYBG (Calmodulin OS=Trypanosoma brucei gambiense PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.012e-12
Identity = 43/122 (35.25%), Postives = 60/122 (49.18%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            +E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VD +G G I+F EF  L    M     E+                   +K+AF V  KD +G IS  EL  ++  LG
Sbjct:   11 SEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEE------------------EIKEAFRVFDKDGNGFISAAELRHIMTNLG 114

HSP 2 Score: 24.2534 bits (51), Expect = 7.012e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  V GDG++  EEF
Sbjct:  123 DEMIREADVDGDGQINYEEF 142

[Close]

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_TRYBB (Calmodulin OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.012e-12
Identity = 43/122 (35.25%), Postives = 60/122 (49.18%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            +E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VD +G G I+F EF  L    M     E+                   +K+AF V  KD +G IS  EL  ++  LG
Sbjct:   11 SEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEE------------------EIKEAFRVFDKDGNGFISAAELRHIMTNLG 114

HSP 2 Score: 24.2534 bits (51), Expect = 7.012e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  V GDG++  EEF
Sbjct:  123 DEMIREADVDGDGQINYEEF 142

[Close]

BLAST of EY754042 vs. ExPASy Swiss-Prot
Match: CALM_PROMN (Calmodulin OS=Prorocentrum minimum PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.012e-12
Identity = 45/122 (36.89%), Postives = 61/122 (50.00%), Query Frame = 3

Query:  279 AELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGXMGGDRQEKXXXXXXXXXXXXXXXXXXXLKDAFDVCGKDKDGVISVEELGLVVAALG 644
            AE K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  L    M     E+                   L +AF V  +D +G IS  EL  V+  LG
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEE------------------ELIEAFKVFDRDGNGFISAAELRHVMTNLG 114

HSP 2 Score: 24.2534 bits (51), Expect = 7.012e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  674 EXMIRKGAVGGDGKVIXEEF 733
            + MIR+  V GDG++  EEF
Sbjct:  123 DEMIREADVDGDGQINYEEF 142

The following BLAST results are available for this feature:

BLAST of EY754042 vs. ExPASy Swiss-Prot

BLAST of EY754042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123


Match Name	E-value	Identity	Description
CALN_CHICK	4.225e-12	35.54	Neo-calmodulin (Fragment) OS=Gallus gallus PE=2 SV...	[more]
CALM_STYLE	5.399e-12	36.89	Calmodulin OS=Stylonychia lemnae PE=3 SV=2	[more]
CALM2_PETHY	5.399e-12	36.07	Calmodulin-2 OS=Petunia hybrida GN=CAM72 PE=2 SV=2	[more]
CALM_TRYCR	5.399e-12	36.07	Calmodulin OS=Trypanosoma cruzi GN=CALA2 PE=3 SV=2	[more]
CALMF_NAEGR	6.523e-12	36.89	Calmodulin, flagellar OS=Naegleria gruberi GN=CAM1...	[more]
CALM_DICDI	6.999e-12	36.07	Calmodulin OS=Dictyostelium discoideum GN=calA PE=...	[more]
CALM_PAXIN	7.012e-12	36.07	Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3	[more]
CALM_TRYBG	7.012e-12	35.25	Calmodulin OS=Trypanosoma brucei gambiense PE=3 SV...	[more]
CALM_TRYBB	7.012e-12	35.25	Calmodulin OS=Trypanosoma brucei brucei PE=3 SV=2	[more]
CALM_PROMN	7.012e-12	36.89	Calmodulin OS=Prorocentrum minimum PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS12-C1-001-010-A04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY754042 ID=EY754042; Name=EY754042; organism=Citrus sinensis; type=EST; length=882bp
CCAGCGTNNCGATCGACTACACACTAGCTAGNTAATTGGGTTCCCCTTAA
TTGCCTCTGTTAACATCTCTCCTTTGTTGCTCTGAGGTAACAAAGAAGAT
GGTGATATCGATATTGTTATTAGCAGTTCTGTTCATTGCCGGCTTCATTA
ATATTTTCTTTTACTTCCCCACCAAGAAGTTTTATGCGTGGATCCAGGGT
TTCTTCAGCAAAAAGGCTACTTCTACTAGTGAATCCCGAGTTTCGTCGCC
AAGCCAAGAGACGAGTGCATACAAGAAAGCTGAGCTCAAGAGGGTATTTG
CGACTTTTGACAAAGACGGCGACGGATTCATAACAAAGACGGAGCTTGTA
GAGTCGCTACGGAACCTAAGGCTGATGGTTACCGACATGGAAGCCGAAGA
AATGGTTGCAAAAGTTGATGCTAATGGAGATGGGCTGATTGAGTTTGATG
AGTTTTGCATGTTGTACGAGGGCNTGATGGGTGGAGATCGCCAGGAAAAG
GGCGGCGCCGGAGATGGGGAAGGTGGTGGTGGTGGTGGTGCCCATGAAGG
CGATGATTTGAAGGATGCTTTTGATGTGTGTGGTAAAGATAAAGATGGGG
TGATTTCAGTGGAGGAGTTGGGGCTAGTGGTGGCTGCCTTAGGGGTTAAT
GAGGGGTACAGGTTGGAATTGGTGAATNGATGATTAGGAAAGGTGCCGTG
GGCGGGGATGGGAAGGTNATTNTGGAGGAGTTTGGGGGGGAGATGAAAGG
CGGGAGAAGGCCTCTTACAGGGCTTGGAGGTCCTGGGGTGCAGGTGTACT
GGGTGCGGAAGAGCAGATGGGGTTCGCCAAGGTGTAGGAGAGGGGGGGTA
GAAGGCTTGGGGGCACTAAAAAAAAGAAAGGA