EY727705

Overview
NameEY727705
Unique NameEY727705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1059
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY727705 vs. ExPASy Swiss-Prot
Match: HMCS_YEAST (Hydroxymethylglutaryl-CoA synthase OS=Saccharomyces cerevisiae GN=ERG13 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.135e-28
Identity = 53/96 (55.21%), Postives = 70/96 (72.92%), Query Frame = 2
Query:  257 KAMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVINKSKSIKT 544
            K   +NVGI  + IY P  CV Q  LE  DG S+GKYTIGLGQ  M+F ++ ED+ SMSLT ++ L++ Y ID  +IGRLEVG+ET+I+KSKS+K+
Sbjct:   43 KTRPQNVGIKGIQIYIPTQCVNQSELEKFDGVSQGKYTIGLGQTNMSFVNDREDIYSMSLTVLSKLIKSYNIDTNKIGRLEVGTETLIDKSKSVKS 138          

HSP 2 Score: 36.965 bits (84), Expect = 3.135e-28
Identity = 19/52 (36.54%), Postives = 32/52 (61.54%), Query Frame = 3
Query:  525 RANPLRLFLMQIFENFGNTDIEGVDSTHACLRRTGGLFYWGNGVKSISGNGR 680
            ++  ++  LMQ+F    NTD+EG+D+ +AC   T  LF   N ++S + +GR
Sbjct:  132 KSKSVKSVLMQLFGE--NTDVEGIDTLNACYGGTNALFNSLNWIESNAWDGR 181          
BLAST of EY727705 vs. ExPASy Swiss-Prot
Match: HMCS2_RAT (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Rattus norvegicus GN=Hmgcs2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.079e-28
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 2
Query:  269 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVINKSKSIKT 544
            K+VGILA+++YFP   V Q  LE  +    GKYT+GLGQ  M FCS  ED+ S+ LT V  L+E+ K+    +GRLEVG+ET+I+KSK++KT
Sbjct:   52 KDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERTKLPWDAVGRLEVGTETIIDKSKAVKT 143          

HSP 2 Score: 47.3654 bits (111), Expect = 4.079e-28
Identity = 21/52 (40.38%), Postives = 35/52 (67.31%), Query Frame = 3
Query:  525 RANPLRLFLMQIFENFGNTDIEGVDSTHACLRRTGGLFYWGNGVKSISGNGR 680
            ++  ++  LM++F++ GNTDIEG+D+T+AC   T  LF   N ++S   +GR
Sbjct:  137 KSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSYWDGR 188          
BLAST of EY727705 vs. ExPASy Swiss-Prot
Match: HMCS2_MOUSE (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Mus musculus GN=Hmgcs2 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 4.079e-28
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 2
Query:  269 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVINKSKSIKT 544
            K+VGILA+++YFP   V Q  LE  +    GKYT+GLGQ  M FCS  ED+ S+ LT V  L+E+ K+    +GRLEVG+ET+I+KSK++KT
Sbjct:   52 KDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERTKLPWDAVGRLEVGTETIIDKSKAVKT 143          

HSP 2 Score: 47.3654 bits (111), Expect = 4.079e-28
Identity = 21/52 (40.38%), Postives = 35/52 (67.31%), Query Frame = 3
Query:  525 RANPLRLFLMQIFENFGNTDIEGVDSTHACLRRTGGLFYWGNGVKSISGNGR 680
            ++  ++  LM++F++ GNTDIEG+D+T+AC   T  LF   N ++S   +GR
Sbjct:  137 KSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSYWDGR 188          
BLAST of EY727705 vs. ExPASy Swiss-Prot
Match: HMCS2_PIG (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Sus scrofa GN=HMGCS2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.079e-28
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  269 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVINKSKSIKT 544
            K+VGILA+++YFP   V Q  LE  D    G+YT+GLGQ  M FCS  ED+ S+ LT V  L+E+ ++    +G LEVG+ET+I+KSKS+KT
Sbjct:   52 KDVGILALEVYFPAQYVDQTDLEKFDNVEAGRYTVGLGQTHMGFCSVQEDINSLCLTVVQRLMERTQLPWDSVGWLEVGTETIIDKSKSVKT 143          

HSP 2 Score: 49.6766 bits (117), Expect = 4.079e-28
Identity = 22/52 (42.31%), Postives = 36/52 (69.23%), Query Frame = 3
Query:  525 RANPLRLFLMQIFENFGNTDIEGVDSTHACLRRTGGLFYWGNGVKSISGNGR 680
            ++  ++  LM++F++ GNTDIEG+D+T+AC   T  LF   N V+S + +GR
Sbjct:  137 KSKSVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWVESSAWDGR 188          
BLAST of EY727705 vs. ExPASy Swiss-Prot
Match: HMCS1_BLAGE (Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella germanica GN=HMGCS-1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.676e-27
Identity = 48/91 (52.75%), Postives = 68/91 (74.73%), Query Frame = 2
Query:  272 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVINKSKSIKT 544
            +VGI+A+++ FP   V Q  LE +D  S GKYT+GLGQ  M FC++ ED+ S+ LT V+ L+E++ I   QIGRLEVG+ET+++KSKS+KT
Sbjct:    5 DVGIVALELIFPSQYVDQVDLEVYDNVSAGKYTVGLGQARMGFCTDREDINSLCLTVVSRLMERWSIPYSQIGRLEVGTETLLDKSKSVKT 95          

HSP 2 Score: 40.4318 bits (93), Expect = 9.676e-27
Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 3
Query:  525 RANPLRLFLMQIFENFGNTDIEGVDSTHACLRRTGGLFYWGNGVKSISGNGRLGPRWGSRTWGVYAKG 728
            ++  ++  LMQ+F++  NTDIEGVD+ +AC   T  LF   + V+S S +GR           VYAKG
Sbjct:   89 KSKSVKTVLMQLFKD--NTDIEGVDTVNACYGGTSALFNAISWVESSSWDGRYALVVAGDI-AVYAKG 153          
BLAST of EY727705 vs. ExPASy Swiss-Prot
Match: HMCS2_BLAGE (Hydroxymethylglutaryl-CoA synthase 2 OS=Blattella germanica GN=HMGCS-2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.616e-26
Identity = 45/92 (48.91%), Postives = 65/92 (70.65%), Query Frame = 2
Query:  269 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVINKSKSIKT 544
            ++VGI+ +++ FP   V Q  LE +D  S GKYT+GLGQ+ M  C++ ED+ S+ LTAV  L+E+  ID   IG LEVG+ET+++K KS+KT
Sbjct:    6 EDVGIIGIEMIFPSLYVDQAELETYDEVSPGKYTMGLGQDKMGVCTDREDINSLCLTAVDKLMERNNIDYNDIGWLEVGTETILDKVKSVKT 97          

HSP 2 Score: 46.9802 bits (110), Expect = 3.616e-26
Identity = 22/52 (42.31%), Postives = 33/52 (63.46%), Query Frame = 3
Query:  525 RANPLRLFLMQIFENFGNTDIEGVDSTHACLRRTGGLFYWGNGVKSISGNGR 680
            +   ++  LMQ+FE  GNTD+EG+D+ +AC R T  LF     ++S S +GR
Sbjct:   91 KVKSVKTVLMQLFEESGNTDVEGIDTINACYRGTAALFNALIWIESSSWDGR 142          
BLAST of EY727705 vs. ExPASy Swiss-Prot
Match: HMCS_SCHPO (Hydroxymethylglutaryl-CoA synthase OS=Schizosaccharomyces pombe GN=hcs1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.544e-25
Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = 2
Query:  269 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVINKSKSIKT 544
            K++GI  + +Y P   V+Q ALEAHDG S GKYTIGLG   MAF  + ED+ S  LTA++ L+++Y+ID  +IGRLEVG+ET+I+KSKS+K+
Sbjct:    6 KDIGIKGLVLYTPNQYVEQAALEAHDGVSTGKYTIGLGLTKMAFVDDREDIYSFGLTALSQLIKRYQIDISKIGRLEVGTETIIDKSKSVKS 97          

HSP 2 Score: 30.0314 bits (66), Expect = 8.544e-25
Identity = 16/54 (29.63%), Postives = 31/54 (57.41%), Query Frame = 3
Query:  525 RANPLRLFLMQIFENFGNTDIEGVDSTHACLRRTGGLFYWGNGVKSISGNGRLG 686
            ++  ++  LMQ+F +  N ++EG+D  +AC      LF   + ++S + +GR G
Sbjct:   91 KSKSVKSVLMQLFGD--NHNVEGIDCVNACYGGVNALFNTIDWIESSAWDGRDG 142          
BLAST of EY727705 vs. ExPASy Swiss-Prot
Match: HMCSB_DICDI (Hydroxymethylglutaryl-CoA synthase B OS=Dictyostelium discoideum GN=hgsB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.169e-23
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  269 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVINKSKSIKTFFDANF*EF 571
            K++GI A+DIYFP T V Q  L+ +D  S GKYTIGLGQ  M+F  + ED++SM++T+V  ++ KY ID + IGRLEVG+ET+I+KSKS+K+   + F E+
Sbjct:    5 KDIGICAIDIYFPQTYVNQSELKKYDKVSNGKYTIGLGQTNMSFVGDREDIVSMAMTSVKMMMSKYSIDYQSIGRLEVGTETIIDKSKSVKSSIMSLFQEY 105          
BLAST of EY727705 vs. ExPASy Swiss-Prot
Match: HMCS_CAEEL (Hydroxymethylglutaryl-CoA synthase OS=Caenorhabditis elegans GN=F25B4.6 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.511e-23
Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  272 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVINKSKSIKT 544
            +VGI A+++YFP   V Q  LE  +  S GKYTIGLGQ+ M FCS+ ED++S+SLT    L+E YKI    IG L VG+ET+I+KSKS+KT
Sbjct:   13 DVGIGAIELYFPQNFVDQNDLEKFNNVSSGKYTIGLGQQQMGFCSDNEDIVSISLTVTRKLIETYKISTDSIGCLVVGTETMIDKSKSVKT 103          

HSP 2 Score: 27.7202 bits (60), Expect = 7.511e-23
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 3
Query:  525 RANPLRLFLMQIFENFGNTDIEGVDSTHAC 614
            ++  ++  LM +F   GN+DIEGVD  +AC
Sbjct:   97 KSKSVKTALMDLFP--GNSDIEGVDIKNAC 124          
The following BLAST results are available for this feature:
BLAST of EY727705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
HMCS_YEAST3.135e-2855.21Hydroxymethylglutaryl-CoA synthase OS=Saccharomyce... [more]
HMCS2_RAT4.079e-2852.17Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_MOUSE4.079e-2852.17Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_PIG4.079e-2851.09Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS1_BLAGE9.676e-2752.75Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella ... [more]
HMCS2_BLAGE3.616e-2648.91Hydroxymethylglutaryl-CoA synthase 2 OS=Blattella ... [more]
HMCS_SCHPO8.544e-2555.43Hydroxymethylglutaryl-CoA synthase OS=Schizosaccha... [more]
HMCSB_DICDI2.169e-2352.48Hydroxymethylglutaryl-CoA synthase B OS=Dictyostel... [more]
HMCS_CAEEL7.511e-2354.95Hydroxymethylglutaryl-CoA synthase OS=Caenorhabdit... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-104-F03-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY727705 ID=EY727705; Name=EY727705; organism=Citrus sinensis; type=EST; length=1059bp
GTGATTGTTCGGGACGGCGGTACGGTCGGGATTCCCGGGTCGACCACGCG
TCCGCTCCGAATATCGAGGCCTGTCTTCTCTTTCTGTCTCTGAACGGCTA
GCTGGGCTACGTTTTACAAACTCAAGCCAACAGCAGAGCAAGAAAGAAAG
CAAAGCAACGCAAAACACATTTTCGTTGTTGTGCTGTTTTCTTGATACAT
ATATATATTTACATATATTTTTCATCTGGGCATTTTCTGTTTTTGAAAAC
CAGATAAAAGCAATGGCAAAGAATGTTGGAATCCTCGCTATGGACATCTA
CTTCCCTCCTACTTGCGTCCAGCAGGAAGCTTTGGAGGCTCATGATGGTG
CAAGCAAAGGAAAATATACAATCGGGCTTGGACAGGAGTGCATGGCATTT
TGTTCAGAGGTGGAAGATGTCATCTCAATGAGCTTGACAGCTGTTACTAA
TCTCCTAGAGAAGTATAAGATTGATCCAAAACAAATTGGTCGTCTCGAAG
TAGGAAGCGAAACTGTGATAAACAAGAGCAAATCCATTAAGACTTTTTTT
GATGCAAATTTTTGAGAATTTTGGAAATACTGACATTGAAGGGGTTGACT
CCACCCATGCCTGCTTACGGAGAACTGGCGGATTATTTTACTGGGGGAAT
GGGGTGAAAAGTATTTCAGGGAACGGGCGCCTAGGGCCTCGTTGGGGGTC
CCGAACGTGGGGGGTTTATGCGAAAGGGCCCCTCCAAAACCCCCTGGAAG
AACCCGCTGGCGGTTTGTCAGGTTAATAAGGGGCTGGAAAGCCCCTGGTT
TGGTTTTTGAAAAGCAAATTTAGGGGGGGAATCCTAAAGTTCCCCAGGGG
CTAGTAATTTTTCCACCAACCCCAAAACCTTGGGGATGGGGAAAAATTCC
CGGGGTGGGTGGAAGGGGGGGAAAATTTTTTTTCCAAAAACAGGGGTCTC
CCCCCCCGGGGGGGCCTTTTTGTTAAAACTTGTTGTTTAAAAAAAAGTGT
TTTTTTATTGGTGGGGCGGGAAACAGAACCCAACAAAAAAAAAACACAGG
GGGGGGGAG
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