EY753980

Overview
NameEY753980
Unique NameEY753980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753980 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.389e-22
Identity = 70/192 (36.46%), Postives = 94/192 (48.96%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAY 670
            RY V ++RRREG+TDY  R +L+  D         R VVR TN+ I  Q+++A + GD  L SA + EL +YG      N  AAY TGLL A +  K               G+D             A+LD+GL + T G RVF ALKG++DGGL+IP+ E       +             + G H+AAY
Sbjct:    6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGESILPSEDR-------------LKGEHIAAY 151          
BLAST of EY753980 vs. ExPASy Swiss-Prot
Match: RL18_PYRFU (50S ribosomal protein L18P OS=Pyrococcus furiosus GN=rpl18p PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.226e-21
Identity = 77/237 (32.49%), Postives = 115/237 (48.52%), Query Frame = 2
Query:   83 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 790
            A+  RY+V ++RRREGKT+YR R++L+   K        R VVR +     AQII     GD  L SA+  EL R +G +    N  +AY  GLL+  +        A+  G  E                  A+LD+GL     G+ VF  LKG++D GL++PHS + F    +             I G H+A Y + L E + EK++  F  Y+ +G++ + L E +++V A I
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYK--------AKQAGIEE------------------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFPDEYR-------------IRGEHIAEYAKMLKEQDEEKFRRQFGGYLVKGLDPEKLPEHFEEVKARI 192          
BLAST of EY753980 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.948e-21
Identity = 75/236 (31.78%), Postives = 113/236 (47.88%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRAD 799
            RY+V  +RRREGKT+Y  R  +    K        RFVVR +NK +  Q+I  +  GD V+A+A++ EL + YG +    +  A Y TG+L A R  K               G  Y+V             D+GL K T G RVF A+K + D GL++P                D       I G H+A+Y  +L  + PE+YQ  F + ++RG++ ++  + +++V A I  D
Sbjct:    6 RYKVPRRRRREGKTNYYKRYTMALSRKP-------RFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVG--------------DVVPDESRIRGEHIASYAESLKNENPEEYQRRFAKLLERGLKPEDYPKHFEEVKAKILED 194          
BLAST of EY753980 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.771e-20
Identity = 68/201 (33.83%), Postives = 98/201 (48.76%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEP 697
            RY+V  +RRRE +TDY  R+RL+   K        R V R +NK +TAQ+++    GD  +ASA++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF   +G++D GLD+PH++   A +S+               G H+A Y  +L  DEP
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSRTR-------------GEHIAEYAESL--DEP 158          
BLAST of EY753980 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.771e-20
Identity = 68/201 (33.83%), Postives = 98/201 (48.76%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEP 697
            RY+V  +RRRE +TDY  R+RL+   K        R V R +NK +TAQ+++    GD  +ASA++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF   +G++D GLD+PH++   A +S+               G H+A Y  +L  DEP
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSRTR-------------GEHIAEYAESL--DEP 158          
BLAST of EY753980 vs. ExPASy Swiss-Prot
Match: RL18_SULSO (50S ribosomal protein L18P OS=Sulfolobus solfataricus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.020e-20
Identity = 72/235 (30.64%), Postives = 105/235 (44.68%), Query Frame = 2
Query:   98 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKVHAA 787
            Y+VK +RRREGKT+Y  R   +   +        RF+VR TNK +  QI      GDI++ASA++ EL  ++G +    N  AAY TG L   R +K                          R     + D+GL   + GNRVF  +KG++D GL IP                D  +    I G H+A Y   L  +  + Y   F  Y++RG+  +NL    EE+  K+ ++
Sbjct:   10 YKVKPRRRREGKTNYYKRYVYVISKQT-------RFIVRITNKYVIVQIAKIDPKGDIMIASAHSAELAKKFGWKGDENNTPAAYLTGYLAGLRAIK--------------------------RGVTECVADIGLHVPSKGNRVFYVIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENSDLYSKLFSRYLQRGLNPENLPSHFEEILNKIKSS 197          
BLAST of EY753980 vs. ExPASy Swiss-Prot
Match: RL18_METBU (50S ribosomal protein L18P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.152e-20
Identity = 65/193 (33.68%), Postives = 94/193 (48.70%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYM 673
            RY+V ++RRREG+TDY  R+RL+   ++       R VVR + + +  Q+++    GD+ L+SA + EL +YG E    N  AAY TGLL   + L        YE  V                     LD+G+  ++ G+RV+ ALKG +D GLD+PH+   F    +             I G HVA YM
Sbjct:    6 RYKVAFRRRREGRTDYHQRLRLLLSRED-------RVVVRKSARHMQIQLVAPDANGDVTLSSAISKELAKYGYEGSTGNTTAAYLTGLLFGYKTLA-----EGYESGV---------------------LDIGIQASSAGSRVYAALKGVVDSGLDVPHNSSVFPSDER-------------IRGEHVAEYM 152          
BLAST of EY753980 vs. ExPASy Swiss-Prot
Match: RL18_METTP (50S ribosomal protein L18P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.729e-20
Identity = 65/183 (35.52%), Postives = 92/183 (50.27%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKY 643
            RY+V ++RRREG+T+Y  R RLI   K        R VVR  N +IT Q+I A + GD  L +  + EL  YG +    N  AAY TGLL  +++L +                 Y+            +LD+GL   + G+RV+ ALKG +D G+D+PHS + F     D  ++  EV R Y
Sbjct:    6 RYRVPFRRRREGRTNYHVRYRLILSRKP-------RVVVRKGNANITIQLIIAELKGDRTLLTVSSKELRNYGFQHSTGNVPAAYLTGLLFGKKMLAL----------------GYN----------EGILDIGLHSNSRGSRVYAALKGVVDAGVDVPHSPEVF----PDDSRIRGEVIRDY 151          
BLAST of EY753980 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.729e-20
Identity = 62/162 (38.27%), Postives = 83/162 (51.23%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSE 580
            RY V ++RR EGKTDY  R+ L++       TP  R VVR TN+ I  Q++   + GD  L +AY+ EL  YG E    +  AAY TG+L A                V+A    Y            A+LD+GL +   G RVF ALKG++D GLD+P+ E
Sbjct:    6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134          
BLAST of EY753980 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.788e-20
Identity = 71/206 (34.47%), Postives = 99/206 (48.06%), Query Frame = 2
Query:   95 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQS 712
            RY V ++RRREGKTDY  R +LI  ++        R VVR TN+ I  Q+I A + GD  L +A + EL  YG +   +N  AAY TG+L A                V+A   D+            A+LD+GL + T G +VF ALKG+++ GLD+PH E+      +             + G H+AAY      D  E  +S
Sbjct:    6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADHPA----------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEEILPADER-------------VKGEHIAAYAPDRAGDLVENVES 165          
The following BLAST results are available for this feature:
BLAST of EY753980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL18_METB69.389e-2236.4650S ribosomal protein L18P OS=Methanoregula boonei... [more]
RL18_PYRFU1.226e-2132.4950S ribosomal protein L18P OS=Pyrococcus furiosus ... [more]
RL18_IGNH47.948e-2131.7850S ribosomal protein L18P OS=Ignicoccus hospitali... [more]
RL18_HALSA1.771e-2033.8350S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_HALS31.771e-2033.8350S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_SULSO3.020e-2030.6450S ribosomal protein L18P OS=Sulfolobus solfatari... [more]
RL18_METBU5.152e-2033.6850S ribosomal protein L18P OS=Methanococcoides bur... [more]
RL18_METTP6.729e-2035.5250S ribosomal protein L18P OS=Methanosaeta thermop... [more]
RL18_METMJ6.729e-2038.2750S ribosomal protein L18P OS=Methanoculleus maris... [more]
RL18_METPE8.788e-2034.4750S ribosomal protein L18P OS=Methanosphaerula pal... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-009-B08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753980 ID=EY753980; Name=EY753980; organism=Citrus sinensis; type=EST; length=899bp
GGCGGNAATCCAAAATCTGACCCACGCGTCCGCTACACTTTGTTCTTCAG
CAATGGCCTTTGCCAAACCCCAAAAGTCAAAAGCTTACTTTAAGCGATAT
CAAGTTAAGTACAAGAGAAGGCGAGAGGGAAAGACTGACTATCGGGCTAG
GATTCGCCTGATCAACCAAGATAAAAACAAGTACAACACGCCAAAGTATC
GGTTTGTTGTGCGATTCACCAACAAAGACATCACTGCACAAATTATATCT
GCCAGCATAGCCGGGGATATAGTCCTTGCATCTGCTTATGCCCATGAGCT
TCCCCGTTATGGTCTTGAGGTGGGCCTCACTAATTATGCAGCAGCTTATT
GCACTGGACTCCTCTTGGCCCGCCGAGTCCTGAAAATGCTTGAGATGGAT
GCTGAGTATGAGGGGAACGTTGAGGCAACAGGAGAGGACTATTCAGTTGA
GCCAACTGAGAACAGGAGGCCTTTCCGTGCCCTGCTCGATGTTGGTCTTG
TGAAAACAACTACTGGTAACCGTGTCTTTGGCGCTCTTAAGGGTTCATTG
GATGGTGGACTTGATATCCCTCACAGTGAGAAGAGATTTGCTGGATTCAG
TAAGGATAGTAAGCAACTTGATGCTGAAGTTCACCGTAAATACATCTATG
GTGGTCATGTTGCTGCCTACATGAGGACTTTGATGGAAGATGAGCCAGAG
AAGTACCAGTCTCACTTTTGTGAATACATCAAGAGAGGTATTGAGGCTGA
TAACCTTGAAGAGTTGTACAAGAAGGTACATGCTGCCATCCGTGCAGACC
CTAACCAGAAGAAATCTGAGAAGAGCCTTCAGCAGAACACAAGAGGTACA
ACCTGAAGAAACTTACGTATGAGGAAAGGAAAGCCAGGTTAGTTGAAAG
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