GE213205

Overview
NameGE213205
Unique NameGE213205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.952e-16
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = -1
Query:  138 LAWSRPRCGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 374
            ++++R      P  CC+GV+ L  AA++T D+Q AC C+K AA     LN   AAG+P  CGVS+PY IS S DCSK+R
Sbjct:   40 ISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.300e-15
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = -1
Query:  141 CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 332
            CC G++SLN+AA +  DR+TAC CLK AA SI  +N   AA LP  CGVS+PY IS +T+C+ +
Sbjct:   53 CCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.698e-15
Identity = 38/70 (54.29%), Postives = 44/70 (62.86%), Query Frame = -1
Query:  138 PIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 347
            P P   C G+RSL +AAR   DRQ AC C+K  A  I  +N   AAGLPG C V IPYKIS S DC +V+
Sbjct:   51 PAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.217e-15
Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = -1
Query:  138 RCGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPS-LNLNNAAGLPGACGVSIPYKISTSTDCSKVR 356
            R G IP  CC+GV+ LN+ ARTT DRQ AC C++ AAR++ S LN   AA LPGAC V I Y IS  T+C+ VR
Sbjct:   45 RGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.896e-15
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = -1
Query:  141 GPIPM-PCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 350
            GP P   CC+GV++L+  AR+  DRQ+ACNCLK  AR I +LN +NA  +P  CGV++PY IS + DCS+V
Sbjct:   43 GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.217e-13
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = -1
Query:  138 PIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 347
            P P  CC GVRSL AAA+T  DR+ ACNC+K AA+   SLN   AA L   CGV + Y +S + +C+ V+
Sbjct:   25 PPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.217e-13
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = -1
Query:  138 PIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 347
            P P  CC GVRSL AAA+T  DR+ ACNC+K AA+   SLN   AA L   CGV + Y +S + +C+ V+
Sbjct:   25 PPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.710e-13
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = -1
Query:  138 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAAR--SIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            G IP  CCNG+R L+  A +  D+Q  C C+K      S  S+ L  AA LPG CGV +PYKI  ST+C+ ++
Sbjct:   44 GAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.710e-13
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = -1
Query:  138 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQA--ARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            GP+P  CCNG+ +L + A+T+ DRQ  C C+K A    ++    + NA  LP  CGV +PYK S STDC  ++
Sbjct:   41 GPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.623e-13
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = -1
Query:  141 CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 332
            CC+GV+ L   AR+T D+Q  C CLK  A +    N   AAG+P  CGVS+PY IS S DCSK+
Sbjct:   54 CCSGVKRLAGLARSTADKQATCRCLKSVAGAY---NAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
The following BLAST results are available for this feature:
BLAST of GE213205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
NLT41_HORVU9.952e-1648.10Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTP_BETVU1.300e-1554.69Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP6_GOSHI1.698e-1554.29Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP5_ARATH2.217e-1556.76Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP1_WHEAT2.896e-1553.52Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP_AMACA1.217e-1350.00Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP1.217e-1350.00Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTPA_ARATH2.710e-1345.21Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP6_ARATH2.710e-1343.84Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTP8_HORVU4.623e-1351.56Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]

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Properties
Property NameValue
Genbank description47 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213205 ID=GE213205; Name=GE213205; organism=Citrus sinensis; type=EST; length=374bp
ATTTCGAGCGGCCGCCCGGGCAGGTACAAAGTGTAGAGAGAGACTCATAA
ATCGGACACAAAAATGTCCTTATTATTATACATTTATTCTACTCCGTCAA
CTTAAACCTGAAAATCAACGGCCCAGATTCCTGTTCACCTGACCTTAGAG
CAGTCAGTGGAGGTGCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCC
TGGAAGACCAGCAGCATTATTAAGGTTGAGGCTAGGGATTGATCTGGCGG
CTTGCTTCAAGCAGTTGCATGCAGTTTGGCGGTCAGGTGTGGTTCTGGCG
GCAGCGTTGAGAGACCTGACGCCGTTGCAGCATGGCATAGGTATAGGGCC
GCACCTCGGCCGCGACCACGCTAA
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