EY753924

Overview
NameEY753924
Unique NameEY753924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.263e-39
Identity = 77/118 (65.25%), Postives = 97/118 (82.20%), Query Frame = 2
Query:   59 MPDKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKK 412
            M   AV +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V DP +IF+F F+T FGGGKSTGFGLIYD+++ AKK+EPKYRL R GL TK + SRKQ KE+KNR KK
Sbjct:    1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKK 118          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.270e-39
Identity = 80/121 (66.12%), Postives = 96/121 (79.34%), Query Frame = 2
Query:   59 MPDKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 421
            M +   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++E LA+MY V  P+ +FVF F+T+FGGGKSTGF LIYD++D AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+RG
Sbjct:    1 MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 120          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_ICTPU (40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 2
Query:   71 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 421
            +VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++E LA+MY    P+ +FVF F+T FGGGK+TGF ++YDS+D AKK EPKYRL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFKTQFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_TAKRU (40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38
Identity = 77/116 (66.38%), Postives = 93/116 (80.17%), Query Frame = 2
Query:   74 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 421
            VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++E LA+MY    P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.377e-36
Identity = 75/120 (62.50%), Postives = 91/120 (75.83%), Query Frame = 2
Query:   65 DKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 424
            D AVTIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+  + +MY   D   + VF F+THFGGGK+TGF LIYD+V++ K FEPK+RL+R GL    +  RKQ KE+KNR KK RGV
Sbjct:   21 DAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGLAEAPKGGRKQRKEKKNREKKFRGV 139          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_ORYLA (40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.523e-36
Identity = 74/117 (63.25%), Postives = 91/117 (77.78%), Query Frame = 2
Query:   74 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 424
            VTIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++E LA+MY    P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL  +GL  K + SRKQ  ER+NR KK+R +
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNRMKKVRSI 120          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 2.859e-35
Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 2
Query:   68 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRG 421
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++E LA+MY   D   +  F  RTHFGGG+STGF LIYDS +S KKFEP YRL+R G    ++K +R+Q K+RKNR KK+ G
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFG 120          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.734e-35
Identity = 78/118 (66.10%), Postives = 94/118 (79.66%), Query Frame = 2
Query:   71 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRG 421
            AVTIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+E LA +Y   + +++ VF FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL  KVEK SR+Q K++KNR KKI G
Sbjct:    4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFG 120          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 4.128e-34
Identity = 70/119 (58.82%), Postives = 93/119 (78.15%), Query Frame = 2
Query:   68 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRG 421
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+E L +MY   D +++  F  RTH+GGG++TGF LIYD V++ KKFEP YRL+R G    ++K +R+Q K+RKNR KK+ G
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFG 120          
The following BLAST results are available for this feature:
BLAST of EY753924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS24_DICDI3.263e-3965.2540S ribosomal protein S24 OS=Dictyostelium discoid... [more]
RS24_SPOFR7.270e-3966.1240S ribosomal protein S24 OS=Spodoptera frugiperda... [more]
RS24_ICTPU4.712e-3865.8140S ribosomal protein S24 OS=Ictalurus punctatus G... [more]
RS24_TAKRU6.154e-3866.3840S ribosomal protein S24 OS=Takifugu rubripes GN=... [more]
RS24_RHIRA3.377e-3662.5040S ribosomal protein S24 OS=Rhizomucor racemosus ... [more]
RS24_ORYLA7.523e-3663.2540S ribosomal protein S24 OS=Oryzias latipes GN=rp... [more]
RS24B_SCHPO2.859e-3562.1840S ribosomal protein S24-B OS=Schizosaccharomyces... [more]
RS24_YEAST3.734e-3566.1040S ribosomal protein S24 OS=Saccharomyces cerevis... [more]
RS24A_SCHPO4.128e-3458.8240S ribosomal protein S24-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-008-E04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753924 ID=EY753924; Name=EY753924; organism=Citrus sinensis; type=EST; length=699bp
ATTCACAAACTGACCCACGCGTCCGGTCGAGGATTAGCAGACTTTTAACC
AACCAACAATGCCGGACAAGGCTGTCACCATTCGAACTAGGAAGTTCATG
ACCAACCGTCTCCTTTCCAGGAAGCAATTCGTTATTGATGTTCTTCATCC
TGGCAGGGCCAATGTTTCCAAGGCTGAGTTGAAGGAGATGTTGGCAAGGA
TGTATGATGTGAAGGACCCCAACTCAATCTTTGTTTTTAAGTTCCGAACT
CACTTTGGAGGTGGGAAATCTACCGGCTTTGGTCTGATCTATGATTCAGT
TGACAGTGCTAAGAAGTTTGAGCCCAAGTACAGGCTTATCAGGAATGGAC
TTGATACCAAGGTAGAGAAGTCAAGGAAGCAGATGAAGGAAAGGAAGAAC
AGGGCTAAGAAGATCCGTGGTGTAAAGAAGACCAAGGCCTCAGATGCTGC
CAAGAAGAAGTGAGCAATTGGAGATTCTTCTGTAGTCTCGAAGCCAATTT
TCTGTGATGGAGTTTCTATAATAGTCTTTTTTTTTTTTGGTTTAGTTCCT
GAAATGAAATCTAGTGTGTTGTGGATTTTGGTGCCATTGGATGTTTANTT
ATATTTGCAGATTTTGAGTACTCCCCCGAAAGACATTTTTGAGTTTTGAA
TGGCAATACATTCGACTTTAACCCTTGTGTTAAAAAAAAAAAAAAAAAA
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