EY753869

Overview
NameEY753869
Unique NameEY753869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753869 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.117e-42
Identity = 104/263 (39.54%), Postives = 149/263 (56.65%), Query Frame = 1
Query:  103 VTSKVIDFVEKLIVKWMYDS------SQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIK-DGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHXKVDPYTGEMFTLGF----APHHHYHIXEYFKDGFMHDPVPIPFQTHMMHDFAI 855
            + + ++D +E  IV  M  +      + P   LSGNFAPV +E P    L V+G +P CL G ++R G NP F P+AG+H FDGDGMIH + I  D + +Y  R+ +T+RL QE   G + F K IG+L G  GL  + +   RA + ++D + G G AN  +V+ +G+LLA+SE D PY VK+   GDL+T+G   +D ++  S  AH KVD  TG++ TL +     PH  Y              + +P  T M+HDFAI
Sbjct:   69 LAATMLDKIESSIVIPMEQNRPLPKPTDPAVQLSGNFAPV-NECPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLETIGRFGFDDQIDSSVIAHPKVDATTGDLHTLSYNVLKKPHLRYLKFNTCGKKTRDVEITLPEPT-MIHDFAI 329          
BLAST of EY753869 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.507e-40
Identity = 100/243 (41.15%), Postives = 132/243 (54.32%), Query Frame = 1
Query:  160 SSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSY----GNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHXKVDPYTGEMFTLGFAPHHHYHIXEYFK---DGFMHDPVPIPFQT--HMMHDFAILR 861
            S  P H LS NFAPV DE PPT    + G LP  LNG ++R GPNP+F P   YH FDGDGM+H ++I +GKAT  SR+V+T +   E+  G      +    G  G+     +      +VL   Y    G G ANT+L +   +L AL E+D PYAV++ E GD++T+G  D+D +L  S TAH K DP TGE F   + P   +    YF+    G     VPI   T    +HDFAI +
Sbjct:  104 SVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNV--FSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETIGRYDFDGKLAMSMTAHPKTDPITGETFAFRYGPVPPF--LTYFRFDSAGKKQRDVPIFSMTSPSFLHDFAITK 342          
BLAST of EY753869 vs. ExPASy Swiss-Prot
Match: ZCD_CROSA (Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 47/115 (40.87%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  526 LDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVL-EDGDLQTLGMLDYDKRLQHSFTAHXKVDPYTGEMFTLGFAPHHHY-HIXEYFKDGFMHDP-VPIPF--QTHMMHDFAI 855
            +D + G G ANT+L + +G+L AL E D PY V++  EDGD+ T+G ++ +   + S TAH K DP TGE F+  + P   Y     Y  DG    P VPI    +   +HDFAI
Sbjct:    3 VDPTKGIGLANTSLQFSNGRLHALCEYDLPYVVRLSPEDGDISTVGRIENNVSTK-STTAHPKTDPVTGETFSFSYGPIQPYVTYSRYDCDGKKSGPDVPIFSFKEPSFVHDFAI 116          
The following BLAST results are available for this feature:
BLAST of EY753869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NCED6_ARATH6.117e-4239.549-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
CCD4_ARATH1.507e-4041.15Probable carotenoid cleavage dioxygenase 4, chloro... [more]
ZCD_CROSA4.276e-1140.87Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-H03-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753869 ID=EY753869; Name=EY753869; organism=Citrus sinensis; type=EST; length=885bp
GAGAGAGTTAGAGAGAGAGTCATGGTGGAGAAACAAAAGCTGGAGAACGA
CGTCGTAGCACGAAATGGAATAGTGGCGGTGGATCCGAAACCGAAGAATG
GAGTGACTTCGAAAGTGATAGACTTTGTGGAGAAACTGATAGTGAAGTGG
ATGTACGATTCTTCACAGCCTCTTCATTATCTCTCCGGTAACTTCGCTCC
AGTTCCTGACGAGACTCCTCCTACTAAAGACCTCCACGTCATCGGCCATC
TCCCCGATTGCTTGAATGGGGAGTTTGTCAGGGTTGGTCCTAATCCCAAG
TTTGCCCCTGTGGCCGGATACCACTGGTTTGATGGAGATGGCATGATTCA
TGGTCTGCGCATCAAAGACGGAAAGGCTACATATGTCTCCCGTTTTGTGA
GGACTTCACGTCTTAAACAGGAAGAATTTTTCGGAGGTGCTAAATTTATG
AAGATTGGAGACCTTAAGGGGCTATTTGGATTACTCATGGTTAACATGCA
AATGCTTAGAGCAAAGTTGAAAGTACTGGATGTTTCATATGGAAATGGGA
CAGCTAATACAGCTCTTGTATATCACCATGGGAAACTTCTAGCGCTCTCA
GAGGCGGACAAACCATATGCCGTCAAAGTTCTGGAAGATGGAGATCTGCA
AACACTTGGTATGCTTGACTATGACAAGAGATTACAACATTCCTTTACTG
CCCATNCAAAGGTTGATCCATACACTGGCGAGATGTTTACTTTGGGCTTT
GCACCACACCACCATTATCACATACNAGAGTATTTCAAAGATGGGTTCAT
GCATGATCCTGTACCAATACCGTTTCAGACCCATATGATGCACGACTTTG
CTATACTGAGAATATGCTTTTTCATGGATCTCCGC
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