EY753660

Overview
NameEY753660
Unique NameEY753660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753660 vs. ExPASy Swiss-Prot
Match: IDH_RICPR (Isocitrate dehydrogenase [NADP] OS=Rickettsia prowazekii GN=icd PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.397e-12
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 3
Query:   15 LCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAIC 308
            + A + G +GL  S NIG+   A+ EAVHGSAPDIAGK +ANP+ LL +++ ML H+   D A  I+NA   TI +G + T D+    ++S   K +C
Sbjct:  237 VAAEISGSVGLAGSANIGQH-YAMFEAVHGSAPDIAGKGIANPSGLLNAAIMMLVHIGQGDIASLIENAWKKTIEDGVH-TFDIYNEHSSS---KKVC 329          
BLAST of EY753660 vs. ExPASy Swiss-Prot
Match: LEU3_SULSO (3-isopropylmalate dehydrogenase OS=Sulfolobus solfataricus GN=leuB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 3
Query:   27 LIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADR-------IQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 317
            + G LGL PS NIG+   ++ E VHG+A DIAGK +ANPTA LLS   ML  +    K ++       ++NAI+ T   G   T D+GGS+   D    I  ++
Sbjct:  234 IAGSLGLAPSANIGDRK-SMFEPVHGAAFDIAGKGIANPTAFLLSVSMMLSRMYELSKENKYILASKSLENAIIETYKSGNKLTEDVGGSAKLKDMVDEIYKYM 336          
BLAST of EY753660 vs. ExPASy Swiss-Prot
Match: LEU3_PELLD (3-isopropylmalate dehydrogenase OS=Pelodictyon luteolum (strain DSM 273) GN=leuB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 3
Query:   21 AGLI-GGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGG----SSTTSDFTKAICDHL 317
            AG+I G LG+ PS +IG    AL E +HGSAPDIAGKN+ANP A + S   M  H   + D ++ I  AI   ++EG  RTAD+      S +T++ T+ I  HL
Sbjct:  249 AGMITGSLGMLPSASIGRVH-ALYEPIHGSAPDIAGKNIANPIATIASVAMMFEHSFCMADISNEIHAAIEGALSEG-LRTADIAAPGQKSVSTTEMTEGIIRHL 351          
BLAST of EY753660 vs. ExPASy Swiss-Prot
Match: LEU3_LEIXX (3-isopropylmalate dehydrogenase OS=Leifsonia xyli subsp. xyli GN=leuB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 42/102 (41.18%), Postives = 58/102 (56.86%), Query Frame = 3
Query:    6 LVYLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 305
            L  L A + GG+GL  S NI   G   ++ E VHGSAPDIAG+  A+PTA +LS   +LRHL     A+R++ A+ + +A    + A    + TTS    AI
Sbjct:  249 LTDLAAAISGGIGLAASGNINPVGEFPSMFEPVHGSAPDIAGEQRADPTAAILSVALLLRHLGERPLAERVERAVTTDLAARSGQMATASQTRTTSQIGDAI 350          
BLAST of EY753660 vs. ExPASy Swiss-Prot
Match: LEU3_CHRVO (3-isopropylmalate dehydrogenase OS=Chromobacterium violaceum GN=leuB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 3
Query:   27 LIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 266
            L G +G+ PS ++ +    L E  HGSAPDIAG+NLANP A +LS+  MLR+       A R+++A+   +A+G YRTAD+
Sbjct:  254 LTGSIGMLPSASLDQNNKGLYEPSHGSAPDIAGQNLANPLATILSAAMMLRYSFGQEAAARRVEDAVKKVLAQG-YRTADI 333          
BLAST of EY753660 vs. ExPASy Swiss-Prot
Match: LEU3B_ASPNG (3-isopropylmalate dehydrogenase B OS=Aspergillus niger GN=leu2B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   27 LIGGLGLTPSCNIG--------EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 305
            LIG LG+ PS ++         E    L E  HGSAP IAGKN+ANPTA++L    M R+   + ++A +I++A+ + +  G  RT DLGG+S+T +F  A+
Sbjct:  263 LIGTLGVLPSASLDGLPHPGKQEKVRGLYEPTHGSAPTIAGKNIANPTAMILCVSLMFRYSFNMENEARQIEDAVRAVLDRG-LRTPDLGGNSSTQEFGDAV 363          
BLAST of EY753660 vs. ExPASy Swiss-Prot
Match: IDH_STAAW (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain MW2) GN=icd PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   21 AGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 239
            A  +GG+G+ P  NI  E G A+ EA HG+AP  AG N  NP++++LSSV ML HL   + AD+I ++I  TIA
Sbjct:  317 AAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIA 390          
BLAST of EY753660 vs. ExPASy Swiss-Prot
Match: IDH_STAAS (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain MSSA476) GN=icd PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   21 AGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 239
            A  +GG+G+ P  NI  E G A+ EA HG+AP  AG N  NP++++LSSV ML HL   + AD+I ++I  TIA
Sbjct:  317 AAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIA 390          
BLAST of EY753660 vs. ExPASy Swiss-Prot
Match: IDH_STAAR (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain MRSA252) GN=icd PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   21 AGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 239
            A  +GG+G+ P  NI  E G A+ EA HG+AP  AG N  NP++++LSSV ML HL   + AD+I ++I  TIA
Sbjct:  317 AAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIA 390          
BLAST of EY753660 vs. ExPASy Swiss-Prot
Match: IDH_STAAN (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain N315) GN=icd PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   21 AGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 239
            A  +GG+G+ P  NI  E G A+ EA HG+AP  AG N  NP++++LSSV ML HL   + AD+I ++I  TIA
Sbjct:  317 AAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIA 390          
The following BLAST results are available for this feature:
BLAST of EY753660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
IDH_RICPR7.397e-1243.88Isocitrate dehydrogenase [NADP] OS=Rickettsia prow... [more]
LEU3_SULSO9.661e-1240.383-isopropylmalate dehydrogenase OS=Sulfolobus solf... [more]
LEU3_PELLD9.661e-1244.763-isopropylmalate dehydrogenase OS=Pelodictyon lut... [more]
LEU3_LEIXX9.661e-1241.183-isopropylmalate dehydrogenase OS=Leifsonia xyli ... [more]
LEU3_CHRVO9.661e-1245.683-isopropylmalate dehydrogenase OS=Chromobacterium... [more]
LEU3B_ASPNG9.661e-1241.183-isopropylmalate dehydrogenase B OS=Aspergillus n... [more]
IDH_STAAW9.661e-1248.65Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAAS9.661e-1248.65Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAAR9.661e-1248.65Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAAN9.661e-1248.65Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-005-D12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753660 ID=EY753660; Name=EY753660; organism=Citrus sinensis; type=EST; length=532bp
CATCATTAGTGTACCTATGTGCTGGGTTGATTGGTGGATTGGGCTTAACA
CCTAGTTGCAATATTGGGGAAGGAGGAATTGCCCTTGCTGAAGCTGTTCA
TGGTTCAGCACCTGATATTGCTGGAAAGAATTTGGCAAATCCAACTGCTT
TGCTGTTGAGTTCGGTAACAATGTTGCGCCATTTGGAGCTCCATGACAAG
GCTGATAGGATCCAAAATGCTATCCTGAGCACAATTGCAGAGGGGAAGTA
TCGAACTGCAGATCTTGGTGGCTCTTCAACGACATCAGATTTCACAAAGG
CAATCTGCGATCATCTTTAAATATTTCTTTCTACATAGAATTTGAATTCA
TGTTCAAGATTTACATTCTACCTTTCTTTTTTTGAGCAATGTCTCAAATT
TGTTTTTTCCCCCCCTTTTTAAAGTGTTTTTCTTTGAGGGGAATGAGACC
CATCACCTTGGTGACTATGTAGAAGTTTTTTTCTGATGAAACTGTTCAGC
CAGAGTGTATATGGCCGTCCTCNNGANAAAAA
back to top