EY753660

Overview
NameEY753660
Unique NameEY753660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753660 vs. ExPASy Swiss-Prot
Match: LEU3_RHOPB (3-isopropylmalate dehydrogenase OS=Rhodopseudomonas palustris (strain BisB18) GN=leuB PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 3
Query:   15 LCAGLIGGLGLTPSCNIGEGGI------ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 284
            + A L G LG+ PS ++G          ++ E VHGSAPDIAGK LANP A+L S    LR+ L++ + AD++  AI + +A+G  RTAD+    +T
Sbjct:  255 IAAMLTGSLGMLPSASLGAVDANTGKRKSMYEPVHGSAPDIAGKGLANPVAMLASFGMALRYSLDMGELADKLDAAIAAVLAKG-LRTADIKSEGST 350          
BLAST of EY753660 vs. ExPASy Swiss-Prot
Match: LEU3_RHOFD (3-isopropylmalate dehydrogenase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=leuB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 3
Query:   21 AGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 284
            A L G +G+ PS ++      L E  HGSAPDIAGK +ANP A +LS+  MLR  L     A RI+ A+   + +G  RTAD+  + TT
Sbjct:  253 AMLTGSIGMLPSASLNASSQGLYEPSHGSAPDIAGKGVANPLATILSAAMMLRFSLNQEVAAQRIEAAVKDVLVQG-LRTADIFSTGTT 340          
BLAST of EY753660 vs. ExPASy Swiss-Prot
Match: LEU3_BLOFL (3-isopropylmalate dehydrogenase OS=Blochmannia floridanus GN=leuB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 3
Query:   18 CAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 266
            CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS+  + R+ L+L+  A  I+ A+   +  G YRT D+
Sbjct:  258 CAEINGSIGILPSASLNEHNFGLYEPAGGSAPDIAGKNIANPIAQILSTALLFRYSLKLNHVAITIEKAVYKALTLG-YRTQDI 340          
BLAST of EY753660 vs. ExPASy Swiss-Prot
Match: LEU3_BACSK (3-isopropylmalate dehydrogenase OS=Bacillus clausii (strain KSM-K16) GN=leuB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 3
Query:   27 LIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 305
            + G LGL PS ++    + L E VHGSAPDIAG   ANP A +LS+  ML++   L D+A  I+ A+   +A+G  RT D+  +S  +  T AI
Sbjct:  256 ITGSLGLLPSASMNTSKVGLFEPVHGSAPDIAGTGAANPLATILSAAMMLQYSFGLADEAKAIEVAVDRVLAQG-VRTKDIAKASENAVSTTAI 348          
The following BLAST results are available for this feature:
BLAST of EY753660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
LEU3_RHOPB8.179e-1142.273-isopropylmalate dehydrogenase OS=Rhodopseudomona... [more]
LEU3_RHOFD8.179e-1143.823-isopropylmalate dehydrogenase OS=Rhodoferax ferr... [more]
LEU3_BLOFL8.179e-1142.863-isopropylmalate dehydrogenase OS=Blochmannia flo... [more]
LEU3_BACSK8.179e-1142.553-isopropylmalate dehydrogenase OS=Bacillus clausi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-005-D12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753660 ID=EY753660; Name=EY753660; organism=Citrus sinensis; type=EST; length=532bp
CATCATTAGTGTACCTATGTGCTGGGTTGATTGGTGGATTGGGCTTAACA
CCTAGTTGCAATATTGGGGAAGGAGGAATTGCCCTTGCTGAAGCTGTTCA
TGGTTCAGCACCTGATATTGCTGGAAAGAATTTGGCAAATCCAACTGCTT
TGCTGTTGAGTTCGGTAACAATGTTGCGCCATTTGGAGCTCCATGACAAG
GCTGATAGGATCCAAAATGCTATCCTGAGCACAATTGCAGAGGGGAAGTA
TCGAACTGCAGATCTTGGTGGCTCTTCAACGACATCAGATTTCACAAAGG
CAATCTGCGATCATCTTTAAATATTTCTTTCTACATAGAATTTGAATTCA
TGTTCAAGATTTACATTCTACCTTTCTTTTTTTGAGCAATGTCTCAAATT
TGTTTTTTCCCCCCCTTTTTAAAGTGTTTTTCTTTGAGGGGAATGAGACC
CATCACCTTGGTGACTATGTAGAAGTTTTTTTCTGATGAAACTGTTCAGC
CAGAGTGTATATGGCCGTCCTCNNGANAAAAA
back to top