EY753608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: HRDD_STRGR (RNA polymerase principal sigma factor hrdD OS=Streptomyces griseus GN=hrdD PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.794e-20 Identity = 46/130 (35.38%), Postives = 81/130 (62.31%), Query Frame = 3 Query: 264 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENA 653 + +AG S L+ +A G ++ I+S LV+ +AR Y G+P DL+Q GN G+++ E+FD+ +G+KFSTY +WIR++I++ +A +R I++P L E+ +I++ ++ +G+ PE E A Sbjct: 76 SDSAGASREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIA 205
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_CHLPN (RNA polymerase sigma factor rpoD OS=Chlamydia pneumoniae GN=rpoD PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 8.452e-20 Identity = 46/128 (35.94%), Postives = 81/128 (63.28%), Query Frame = 3 Query: 288 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTGLS 671 R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E A+ GL+ Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELAEELGLT 432
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD2_SYNE7 (RNA polymerase sigma factor rpoD2 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD2 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 8.452e-20 Identity = 49/163 (30.06%), Postives = 94/163 (57.67%), Query Frame = 3 Query: 141 RLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGK 629 RL+ A E + VQ + L +T L G WA A ++ L + + G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD ++GYKFSTY +WIR++I++ +A+ +R I++P + +++K++K ++ L+ G+ Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGR 186
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_TREPA (RNA polymerase sigma factor rpoD OS=Treponema pallidum GN=rpoD PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.883e-19 Identity = 51/180 (28.33%), Postives = 104/180 (57.78%), Query Frame = 3 Query: 135 GRRLMIARNEAEMSKGVQVVAN-LERIKTTLEKESGKAARL-----NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656 GR L + R A++ + + + A+ ++ I T ++K + + R+ N ++ + + H+ +++LI + LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ +GYKFSTY +WIR++I++ ++ AR I++P + +I+K+ + + L G+ P D E A+ Sbjct: 305 GRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLK-KAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQ 483
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: HRDD_STRCO (RNA polymerase principal sigma factor hrdD OS=Streptomyces coelicolor GN=hrdD PE=3 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 1.883e-19 Identity = 54/174 (31.03%), Postives = 92/174 (52.87%), Query Frame = 3 Query: 144 LMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTG 665 L+ A E E+S+ ++ ++ E+ A R A SER ++ I+S LV+ +AR Y G+P DL+Q GN G+++ E+FD+ +G+KFSTY +WIR++I++ +A +R I++P L E+ +I++ ++ HG+ PE E A G Sbjct: 48 LLDAAKEVELSQTIEAGVFARQVLEGYEETGADATREELQA-LIDESERA-----------KDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELG 209
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPSC_SYNY3 (Probable RNA polymerase sigma-C factor OS=Synechocystis sp. (strain PCC 6803) GN=sigC PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.212e-19 Identity = 54/162 (33.33%), Postives = 96/162 (59.26%), Query Frame = 3 Query: 186 QVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTGLS 671 Q VA L K TL+ SGK WA+ AG++ L+ G + +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ + E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI++A++ ++ G P+ E A+ G++ Sbjct: 128 QTVATL---KQTLK--SGKKR----WAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQEKGHTPKIDEVAEELGMT 280
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPSC_ANASP (RNA polymerase sigma-C factor OS=Anabaena sp. (strain PCC 7120) GN=sigC PE=3 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 3.212e-19 Identity = 42/125 (33.60%), Postives = 80/125 (64.00%), Query Frame = 3 Query: 261 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 635 WA+ A ++ L++ + G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ + E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ + G+ P Sbjct: 156 WAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTP 280
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: HRDD_STRVF (RNA polymerase principal sigma factor hrdD OS=Streptomyces viridifaciens GN=hrdD PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.212e-19 Identity = 52/174 (29.89%), Postives = 93/174 (53.45%), Query Frame = 3 Query: 144 LMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTG 665 L+ A E E+S+ ++ +++ E+ A R L+ + G ++ I+S LV+ +AR Y G+P DL+Q GN G+++ E+FD+ +G+KFSTY +WIR++I++ +A +R I++P L E+ +I++ ++ HG+ PE E A G Sbjct: 48 LLDAAKEVELSQTIEAGVFAQQVLDGEEESRTDATR------------EELQALVDAGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEVAAELG 209
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPSB_ANASP (RNA polymerase sigma-B factor OS=Anabaena sp. (strain PCC 7120) GN=sigB PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.478e-19 Identity = 50/161 (31.06%), Postives = 93/161 (57.76%), Query Frame = 3 Query: 144 LMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHG 626 L+ E ++ VQ + + K L ++ + L WA + E VL Q L+ G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD T GYKFSTY +WIR+ I++ +A+ +R I++P + +++KI+ ++ L+ G Sbjct: 37 LLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLG 197
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_CHLTR (RNA polymerase sigma factor rpoD OS=Chlamydia trachomatis GN=rpoD PE=3 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 5.478e-19 Identity = 53/166 (31.93%), Postives = 92/166 (55.42%), Query Frame = 3 Query: 195 ANLERIKTTLEKESGKAARLNCWAQAAGVS-------ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTGLS 671 A ER K K + +L+ AAG + R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E + G + Sbjct: 267 ARAERNKFAAAKLAAARRKLHKREVAAGRTLEEFKKDVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELGEELGFT 432 The following BLAST results are available for this feature:
BLAST of EY753608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 91
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Sequences
The
following sequences are available for this feature:
EST sequence >EY753608 ID=EY753608; Name=EY753608; organism=Citrus sinensis; type=EST; length=879bpback to top |