EY753561

Overview
NameEY753561
Unique NameEY753561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753561 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 6.443e-13
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1
Query:   13 TFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 138
            TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of EY753561 vs. ExPASy Swiss-Prot
Match: RER1_CAEEL (Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.875e-12
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1
Query:   13 TFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 144
            TFF  FDVPVFWPIL+ Y+ +L  LT++RQI HMIKYRYIPF +
Sbjct:  131 TFFEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPFTV 174          
BLAST of EY753561 vs. ExPASy Swiss-Prot
Match: RER1_SCHPO (Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.215e-11
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1
Query:   13 TFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 144
            +FF +FDVPVFWPIL+ Y++VL     RRQI HM+KYRY+PF+I
Sbjct:  133 SFFRIFDVPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYVPFDI 176          
BLAST of EY753561 vs. ExPASy Swiss-Prot
Match: RER1_DICDI (Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.215e-11
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    4 FCLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 144
            FC TF    D+PVFWPILL Y+I++F +TM++QI HMIKY+YIPF +
Sbjct:  133 FC-TFIPFLDLPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTV 178          
The following BLAST results are available for this feature:
BLAST of EY753561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1_BOVIN6.443e-1373.81Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2[more]
RER1_CAEEL1.875e-1268.18Protein RER1 homolog OS=Caenorhabditis elegans GN=... [more]
RER1_SCHPO1.215e-1163.64Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 ... [more]
RER1_DICDI1.215e-1161.70Protein RER1 homolog OS=Dictyostelium discoideum G... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-C07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753561 ID=EY753561; Name=EY753561; organism=Citrus sinensis; type=EST; length=470bp
AGCTTTTGTTTGACATTCTTTTCTGTGTTTGATGTTCCTGTGTTTTGGCC
TATATTACTTTGTTACTGGATTGTTCTGTTTGTTCTTACAATGAGACGCC
AAATCGCACACATGATCAAATACAGATATATCCCGTTCAACATTGGAAAA
CAGAAGTATGGTGGTAAGAAACCTTCATCAAGTGGCGGTGGCTCCCGTGG
GGACTGAAGCAGAACTTATTCACAGAGCCAGTAGAAAAAGGACTGGATGG
GGATAAAAAAATAGGTTATGGGAAGATATTATAATTGAATTTTTTCCTTT
CAAGGGACATGCACTTGGTTATTATGAATGAAGCTTATAGTAGACATAAA
GTTCAATAGTGCGGGATTGCTAAAATGTTGCAGAATTGAAACTTTAATGT
TTACGCTCATGTTATGAAGATTCCAAGATTGTTGGCAATGTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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