EY753556 | Citrus Genome Database

Overview


Name	EY753556
Unique Name	EY753556
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	778

Libraries


Library Name	Type
Sweet orange leaf, field plant A	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: CDC42_AEDAE (Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.694e-14
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1

Query:  238 IKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            IKCV V DGAVGKTC+L SY +N FP++YVPTVFDN +  V++GG P    ++DT G
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60

[Close]

BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RHOG_MOUSE (Rho-related GTP-binding protein RhoG OS=Mus musculus GN=Rhog PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.268e-13
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1

Query:  238 IKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            IKCV V DGAVGKTC+L  Y +N FP +Y+PTVFDN SA   V G  VN  +WDT G
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG 60

[Close]

BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RHOG_HUMAN (Rho-related GTP-binding protein RhoG OS=Homo sapiens GN=RHOG PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.268e-13
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1

Query:  238 IKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            IKCV V DGAVGKTC+L  Y +N FP +Y+PTVFDN SA   V G  VN  +WDT G
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG 60

[Close]

BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RHOG_CRICR (Rho-related GTP-binding protein RhoG OS=Cricetus cricetus GN=RHOG PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.268e-13
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1

Query:  238 IKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            IKCV V DGAVGKTC+L  Y +N FP +Y+PTVFDN SA   V G  VN  +WDT G
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG 60

[Close]

BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: CDC42_SCHPO (Cell division control protein 42 homolog OS=Schizosaccharomyces pombe GN=cdc42 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.268e-13
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1

Query:  238 IKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            IKCV V DGAVGKTC+L SY +N FP+DYVPTVFDN +  V++G  P    ++DT G
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAG 60

[Close]

BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: CDC42_MACFA (Cell division control protein 42 homolog OS=Macaca fascicularis GN=CDC42 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.164e-13
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1

Query:  238 IKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            IKCV V DGAVGKTC+L SY +N FP++YVPTVF+N +  V++GG P    ++DT G
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFNNYAVTVMIGGEPYTLGLFDTAG 60

[Close]

BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: CDC42_YEAST (Cell division control protein 42 OS=Saccharomyces cerevisiae GN=CDC42 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1

Query:  238 IKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            +KCV V DGAVGKTC+L SY +N FP DYVPTVFDN +  V++G  P    ++DT G
Sbjct:    4 LKCVVVGDGAVGKTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAG 60

[Close]

BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: CDC42_ASHGO (Cell division control protein 42 OS=Ashbya gossypii GN=CDC42 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1

Query:  238 IKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            +KCV V DGAVGKTC+L SY +N FP DYVPTVFDN +  V++G  P    ++DT G
Sbjct:    4 LKCVVVGDGAVGKTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAG 60

[Close]

BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: CDC42_COLGL (Cell division control protein 42 homolog OS=Colletotrichum gloeosporioides GN=CDC42 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.691e-13
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1

Query:  238 IKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            IKCV V DGAVGKTC+L SY +N FP++YVPTVFDN +  V++G  P    ++DT G
Sbjct:    6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGDEPYTLGLFDTAG 62

[Close]

BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RACH_DICDI (Rho-related protein racH OS=Dictyostelium discoideum GN=racH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1

Query:  238 IKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            IK + V D +VGKTC+L SY +N+FP +YVPTVFDN +AN +V  +P+N  +WDT G
Sbjct:    5 IKVMVVGDMSVGKTCLLISYTTNSFPGEYVPTVFDNYNANAIVNNTPINLGLWDTAG 61

The following BLAST results are available for this feature:

BLAST of EY753556 vs. ExPASy Swiss-Prot

BLAST of EY753556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83


Match Name	E-value	Identity	Description
CDC42_AEDAE	5.694e-14	59.65	Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1	[more]
RHOG_MOUSE	1.268e-13	61.40	Rho-related GTP-binding protein RhoG OS=Mus muscul...	[more]
RHOG_HUMAN	1.268e-13	61.40	Rho-related GTP-binding protein RhoG OS=Homo sapie...	[more]
RHOG_CRICR	1.268e-13	61.40	Rho-related GTP-binding protein RhoG OS=Cricetus c...	[more]
CDC42_SCHPO	1.268e-13	59.65	Cell division control protein 42 homolog OS=Schizo...	[more]
CDC42_MACFA	2.164e-13	57.89	Cell division control protein 42 homolog OS=Macaca...	[more]
CDC42_YEAST	2.826e-13	57.89	Cell division control protein 42 OS=Saccharomyces ...	[more]
CDC42_ASHGO	2.826e-13	57.89	Cell division control protein 42 OS=Ashbya gossypi...	[more]
CDC42_COLGL	3.691e-13	57.89	Cell division control protein 42 homolog OS=Collet...	[more]
RACH_DICDI	4.820e-13	56.14	Rho-related protein racH OS=Dictyostelium discoide...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS12-C1-001-004-C02-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY753556 ID=EY753556; Name=EY753556; organism=Citrus sinensis; type=EST; length=778bp
CTGTCTCTTTGCAGATTAGGGTTTAATTACCTTCGCTACCTTAATTCAAG
ACTTCTTTTCACTCAATTCCTAAGCTCCCGTTGACGAACTGAGTTGTTCT
CTTTTGGTCTTCGAAATGAGTGAAGTCTGAGGCAAGAAGTGTACGTAAAG
AACCTGAGCAGTCTTCCAAGGGCATTGTCGGAATAAGCTGGGGAAGAGAA
TAGAGATCTGGTGGCGCAAATGAGCGCGTCGAGGTTCATAAAGTGCGTCA
CTGTCTGTGACGGCGCCGTCGGAAAAACTTGCGTGCTTACTTCTTACGCC
AGCAACACTTTCCCAACGGACTATGTGCCAACTGTCTTTGACAATTTGAG
TGCGAATGTGGTTGTTGGTGGGAGTCCGGTCAACTCGTGGGTTTGGGACA
CTGTTGGTTTGTGAGATTCCCAGTGGTGGAGATCGNGGGTTTTTGTGGTA
GTTTTGCGGGTTACTTGGTTCGTGCTGCTTTCTCGGGCGTGTTGCGATTG
TTCTGGAGATTGTGTGCTTGGCGGCGTGCTTCGGGCCGCGGCGGCGGCGT
TTTTGGGCGGCGGGCGTGCATTTTTGTTTCCGTCTGTCGATATTGTTTTC
TGTGTGGCGCTCTGCCCCCCCCTCCCCTCCTTTCTCCGCCGGGGCGACGT
CATGTCCTGCCCCCCCCTCCTTCGCTCCGCCCGCCGCGCTCCCCGTGCTC
GNCGCNTTTCTGTACTTCCGTCCTCTCCCTCGGGAATTATTTAACTCCCT
TCTCTTTTTTCTTCCCTGTCTCGCCGCT