EY753548

Overview
NameEY753548
Unique NameEY753548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753548 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 5.910e-112
Identity = 198/251 (78.88%), Postives = 216/251 (86.06%), Query Frame = 2
Query:   71 LCMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAXVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYRNMIVQNQENVKRVQLAEQLLSEAVLGEPNENAIQDGNFMA 823
            + MSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRA VYDDEVRKW            L+NS +  PTFEQP+MT+EKLLEY NM+VQ QENVKRVQLA++ L EA LG+ N +AI +G+F A
Sbjct:  191 IMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFFA 441          

HSP 2 Score: 20.7866 bits (42), Expect = 5.910e-112
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1
Query:   52 KMGINPIM 75
            KMGINPIM
Sbjct:  185 KMGINPIM 192          
BLAST of EY753548 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 403.29 bits (1035), Expect = 7.710e-112
Identity = 197/247 (79.76%), Postives = 215/247 (87.04%), Query Frame = 2
Query:   71 LCMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAXVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYRNMIVQNQENVKRVQLAEQLLSEAVLGEPNENAIQDG 811
            + MSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRA VYDDEVRKW          + L+NS++  PTFEQP+MT+EKLLEY NM+VQ QENVKRVQLAE  L EA LG+ N +AI  G
Sbjct:  186 IMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          

HSP 2 Score: 20.7866 bits (42), Expect = 7.710e-112
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1
Query:   52 KMGINPIM 75
            KMGINPIM
Sbjct:  180 KMGINPIM 187          
BLAST of EY753548 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 2.916e-111
Identity = 198/249 (79.52%), Postives = 216/249 (86.75%), Query Frame = 2
Query:   71 LCMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAXVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYRNMIVQNQENVKRVQLAEQLLSEAVLGEPNENAIQDGNF 817
            + MSAGELESGNAGEPAKLIRQRYREA+D+IKKGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRA VYDDEVRKW          K LVNSKE  PTF+QP+MT++KLL Y +M+VQ QENVKRVQLA+Q L+EA LG  NE+AI+ G+F
Sbjct:  191 IMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSF 439          

HSP 2 Score: 20.7866 bits (42), Expect = 2.916e-111
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1
Query:   52 KMGINPIM 75
            KMGINPIM
Sbjct:  185 KMGINPIM 192          
BLAST of EY753548 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 391.349 bits (1004), Expect = 1.324e-108
Identity = 192/252 (76.19%), Postives = 210/252 (83.33%), Query Frame = 2
Query:   71 LCMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAXVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYRNMIVQNQENVKRVQLAEQLLSEAVLGEPNENAIQDGNFMAK 826
            + MSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRA VY DEVRKW          K LVNSK+  P FEQP MT++KL+EY NM+VQ QENVKRVQLA+Q +S A LG+ N++AI  G F  K
Sbjct:  185 IMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGK 436          

HSP 2 Score: 21.9422 bits (45), Expect = 1.324e-108
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = 3
Query:  846 PFPERWTDPY*KNFAPTAK 902
            P  +  TDP  KN+ PTA+
Sbjct:  444 PVAQGCTDPEAKNYDPTAR 462          
BLAST of EY753548 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 389.423 bits (999), Expect = 1.113e-107
Identity = 190/230 (82.61%), Postives = 204/230 (88.70%), Query Frame = 2
Query:   71 LCMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAXVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYRNMIVQNQENVKRVQLAEQL 760
            + MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRA VYDDEVRKW          ++LVNSKE+ PTF+QP+MT+EKLLEY NM+V  QENVKRV+L   +
Sbjct:  184 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKLVTSI 413          

HSP 2 Score: 20.7866 bits (42), Expect = 1.113e-107
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1
Query:   52 KMGINPIM 75
            KMGINPIM
Sbjct:  178 KMGINPIM 185          
BLAST of EY753548 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.605e-88
Identity = 165/236 (69.92%), Postives = 185/236 (78.39%), Query Frame = 2
Query:   71 LCMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAXVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYRNMIVQNQENVKRVQLAEQLLSEAVL 778
            + MSAGELESGNAGEPAKLIR RYREA+DIIKKG+MC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y  EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRA VYDD VR+W          + LVN+++      +  M +  L++Y   +V  QENVKRVQLA+  LS A L
Sbjct:  160 IVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV-AMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394          
BLAST of EY753548 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 8.420e-71
Identity = 132/228 (57.89%), Postives = 167/228 (73.25%), Query Frame = 2
Query:   77 MSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAXVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYRNMIVQNQENVKRVQLAEQ 757
            +S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+ +YD+++R +            +VNS E  P F++P  T+  L+E  N +V  Q+ ++  QL ++
Sbjct:   61 ISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDE 288          
BLAST of EY753548 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.200e-70
Identity = 133/228 (58.33%), Postives = 167/228 (73.25%), Query Frame = 2
Query:   77 MSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAXVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYRNMIVQNQENVKRVQLAEQ 757
            +S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+ +YD ++R +            +VNS EA P F++P  ++  L+E  N+++  Q+ V   QL ++
Sbjct:   61 ISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDE 288          
BLAST of EY753548 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.269e-22
Identity = 74/163 (45.40%), Postives = 75/163 (46.01%), Query Frame = 2
Query:   71 LCMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 559
            + MSAGELESGNAGEPAK                 MCCL INDLDAGAGR                                         VPIIVTGNDFSTLYAPLI                RIGVC GIFR           LVDTFPGQSIDFFGALR
Sbjct:   63 IMMSAGELESGNAGEPAK-----------------MCCLFINDLDAGAGR-----------------------------------------VPIIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPGQSIDFFGALR 140          

HSP 2 Score: 20.7866 bits (42), Expect = 3.269e-22
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1
Query:   52 KMGINPIM 75
            KMGINPIM
Sbjct:   57 KMGINPIM 64          
The following BLAST results are available for this feature:
BLAST of EY753548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA1_TOBAC5.910e-11278.88Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN7.710e-11279.76Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU2.916e-11179.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.324e-10876.19Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.113e-10782.61Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE2.605e-8869.92Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC8.420e-7157.89Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP3.200e-7058.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY3.269e-2245.40Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-B06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753548 ID=EY753548; Name=EY753548; organism=Citrus sinensis; type=EST; length=903bp
TACTGGTGCCGGNAATTCCCGGCCCGACCCACGCGTCCGCGGACGCGTGT
GAAGATGGGCATCAACCCAATTATGCATGAGTGCCGGAGAATTGGAAAGT
GGCAATGCTGGAGAACCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGC
AGCTGACATTATCAAGAAGGGAAAAATGTGCTGCCTCATGATCAATGATC
TTGATGCAGGAGCTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAAC
AACCAAATGGTTAACGCCACACTCATGAACATTGCTGATAACCCAACTTG
TGTCCAACTCCCTGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCAA
TCATAGTCACCGGTAATGACTTCTCAACATTGTATGCTCCTCTCATCCGT
GATGGTCGTATGGAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTAT
TGGTGTGTGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACA
TTGTCAAGCTTGTCGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGA
GCCCTGAGGGCCANAGTCTATGATGATGAGGTGAGGAAGTGGATCTCTGG
TGTTGGTGTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAG
CCCCAACATTCGAGCAACCAAGGATGACAATGGAGAAGCTGCTCGAGTAC
CGAAACATGATTGTGCAAAACCAAGAAAATGTGAAGAGAGTTCAGTTGGC
TGAACAGTTATTGAGTGAGGCCGTTCTTGGGGAACCTAATGAAAATGCTA
TTCAGGATGGAAATTTTATGGCAAAACACCCCAACAAATGATGGTCCCTT
TCCTGAAAGATGGACTGATCCCTACTGAAAAAATTTTGCTCCCACTGCAA
AAA
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