EY753463

Overview
NameEY753463
Unique NameEY753463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_SYNJB (50S ribosomal protein L28 OS=Synechococcus sp. GN=rpmB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.036e-16
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 2
Query:  275 VARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 508
            +ARR C  T KK N A  +S S+ +T + Q VNLQ+K++WWE GKR+V+LRLSTKALKT++  G+ A+A++A IDL +
Sbjct:    1 MARR-CQLTNKKRNNAFAISHSHRRTKRLQEVNLQWKRIWWEEGKRFVRLRLSTKALKTLKAKGIGAMAREAGIDLNQ 77          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_SYNJA (50S ribosomal protein L28 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpmB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.036e-16
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 2
Query:  275 VARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 508
            +ARR C  T KK N A  +S S+ +T + Q VNLQ+K++WWE GKR+V+LRLSTKALKT++  G+ A+A++A IDL +
Sbjct:    1 MARR-CQLTNKKRNNAFAISHSHRRTKRLQEVNLQWKRIWWEEGKRFVRLRLSTKALKTLKAKGIGAMAREAGIDLNQ 77          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_MICAN (50S ribosomal protein L28 OS=Microcystis aeruginosa (strain NIES-843) GN=rpmB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.353e-16
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDL 502
            RVC  TGKK+N A  VS S+ +T K Q  NLQ+K+VWW  G R+VKLR+STKA+KTIEK GL   A++  ++L
Sbjct:    3 RVCTMTGKKANNAYAVSHSHRRTKKLQEANLQWKRVWWSEGNRWVKLRISTKAIKTIEKKGLAVFAREVGLNL 75          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_ANASP (50S ribosomal protein L28 OS=Anabaena sp. (strain PCC 7120) GN=rpmB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.768e-16
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDL 502
            R C  TGKK+N A  VS S+ +T + Q VNLQ K+VWW +G R+VKL+LSTKA+KT+E  GL+A+AK+A I+L
Sbjct:    3 RRCDLTGKKANNAFAVSHSHRRTKRLQQVNLQNKRVWWPSGNRWVKLKLSTKAIKTLEVKGLEAMAKEAGINL 75          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_SYNY3 (50S ribosomal protein L28 OS=Synechocystis sp. (strain PCC 6803) GN=rpmB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.938e-16
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 2
Query:  275 VARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 508
            +ARR C  TGKK+N    VS S+ +T K Q  NLQ+K+VWW  G R+V+LRLST A+KT+E  G++A+AK+A I+L K
Sbjct:    1 MARR-CQLTGKKANNGFAVSHSHRRTKKLQQANLQWKRVWWPEGNRFVRLRLSTTAIKTLESKGINAMAKEAGINLNK 77          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_ACAM1 (50S ribosomal protein L28 OS=Acaryochloris marina (strain MBIC 11017) GN=rpmB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.938e-16
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  290 CPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 508
            C  TGKK+N A  VS S+ +T K Q  NLQ+K+VWW   KR+VKLRLSTKA+KT+EK GL A A++A I+L +
Sbjct:    5 CQLTGKKANNAFAVSHSHRRTHKLQEANLQWKRVWWPQEKRWVKLRLSTKAIKTLEKKGLAAFAREAGINLNQ 77          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_ANAVT (50S ribosomal protein L28 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.143e-16
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDL 502
            R C  TGKK+N A  VS S+ +T + Q  NLQ K+VWW +G R+VKL+LSTKA+KT+E  GL+A+AK+A I+L
Sbjct:    3 RRCDLTGKKANNAFAVSHSHRRTKRLQQANLQSKRVWWPSGNRWVKLKLSTKAIKTLEVKGLEAMAKEAGINL 75          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_PROMP (50S ribosomal protein L28 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpmB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.553e-15
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 508
            RVC  TG K+N    VS S+ +T K Q VNLQ +++WW+ GK++V +++STKALK+I+K GLD VAK   +DL K
Sbjct:    3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWQEGKKWVNIKISTKALKSIQKVGLDKVAKTNGVDLNK 77          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_PROM9 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpmB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.553e-15
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 508
            RVC  TG K+N    VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+++K GLD  AK   +DL+K
Sbjct:    3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSVQKVGLDKFAKSNGVDLKK 77          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_PROM2 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpmB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.553e-15
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 508
            RVC  TG K+N    VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+I+K GLD  AK   +DL+K
Sbjct:    3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSIQKVGLDKFAKSNGVDLQK 77          
The following BLAST results are available for this feature:
BLAST of EY753463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RL28_SYNJB1.036e-1653.8550S ribosomal protein L28 OS=Synechococcus sp. GN=... [more]
RL28_SYNJA1.036e-1653.8550S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_MICAN1.353e-1656.1650S ribosomal protein L28 OS=Microcystis aeruginos... [more]
RL28_ANASP1.768e-1657.5350S ribosomal protein L28 OS=Anabaena sp. (strain ... [more]
RL28_SYNY33.938e-1653.8550S ribosomal protein L28 OS=Synechocystis sp. (st... [more]
RL28_ACAM13.938e-1657.5350S ribosomal protein L28 OS=Acaryochloris marina ... [more]
RL28_ANAVT5.143e-1656.1650S ribosomal protein L28 OS=Anabaena variabilis (... [more]
RL28_PROMP2.553e-1552.0050S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROM92.553e-1550.6750S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROM22.553e-1552.0050S ribosomal protein L28 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-A12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753463 ID=EY753463; Name=EY753463; organism=Citrus sinensis; type=EST; length=823bp
ATTCCAAAACTGACCCACGCGTCCGCAAATACACTTGGAATCGAAAAGAT
GGCAACAATGCCCGACACCGGGAGGAGTTTTATTGGGAAACACTTCCAAT
CTACCCTGTCGCCGCCCACGTCTGTCTCCGAAGTCCATGGTTAAGGTAGT
CTCCTCCTCGGAAGAACTGGGTTTCGTTACTTCACAACTCAGTGGCATCA
AAATTTCGTACCGCCTACCTGACGTGGCCACACCCATTTCCTCTCGTCCT
TTCGCCCCGGGTCTTCAACCTATTGTTGCGCGTAGAGTGTGCCCCTTCAC
TGGAAAGAAATCAAACAAGGCAAACAAAGTTTCCTTCTCTAACCACAAGA
CAACTAAGCGGCAGTTTGTTAACCTACAGTATAAGAAGGTTTGGTGGGAG
GCCGGCAAGCGTTATGTGAAGCTGCGTTTGTCAACAAAGGCATTAAAGAC
GATAGAGAAAAATGGATTGGATGCTGTTGCTAAGAAGGCTAGAATAGATC
TTCGCAAGGAATGATATAGATGGTCTAACTATTTTTACCTATAGCTGTTG
GTAAAGCTTGTATGCTCACTGTTTCTCTCGAAATTTAATTTCATGTTGCA
CTGTATCTTCTTTTTGCTTGTTCTGTTGAATTCTTCCCAATTAAATGAGA
ATACTGATCATTAAAGCCTCAAGGTTTTTGTTAGTTCATTTTCGCATGTC
GTCATGAGGCTTTGCGTCGATGGCTCTATGAGCATTCAGCGCGTNGTGTA
TGATCTTCTATCAGAAGAAAGAGAATTGTAAAACACAGAACAGCATTTTT
GCTGAAAAAAAAAAAAAAAAAAA
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