EY753463

Overview
NameEY753463
Unique NameEY753463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_XANOM (50S ribosomal protein L28 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  +GK+    N VS +N++T +R   NL  ++ W  +  R+VKLR+S  AL+TI+KNG+DAV K+ R
Sbjct:    3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_XANCP (50S ribosomal protein L28 OS=Xanthomonas campestris pv. campestris GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  +GK+    N VS +N++T +R   NL  ++ W  +  R+VKLR+S  AL+TI+KNG+DAV K+ R
Sbjct:    3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_XANCB (50S ribosomal protein L28 OS=Xanthomonas campestris pv. campestris (strain B100) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  +GK+    N VS +N++T +R   NL  ++ W  +  R+VKLR+S  AL+TI+KNG+DAV K+ R
Sbjct:    3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_XANC8 (50S ribosomal protein L28 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  +GK+    N VS +N++T +R   NL  ++ W  +  R+VKLR+S  AL+TI+KNG+DAV K+ R
Sbjct:    3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_XANC5 (50S ribosomal protein L28 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  +GK+    N VS +N++T +R   NL  ++ W  +  R+VKLR+S  AL+TI+KNG+DAV K+ R
Sbjct:    3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_XANAC (50S ribosomal protein L28 OS=Xanthomonas axonopodis pv. citri GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  +GK+    N VS +N++T +R   NL  ++ W  +  R+VKLR+S  AL+TI+KNG+DAV K+ R
Sbjct:    3 RVCQVSGKRVQTGNNVSHANNRTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDAVLKELR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_BORPD (50S ribosomal protein L28 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 493
            RVC  TGK     N VS +N+KT +R   NLQ ++ W E+  R+V+LR+S KA++ I+KNG+DAV    R
Sbjct:    3 RVCQVTGKGPMTGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVSAKAIRIIDKNGIDAVLADLR 72          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_PSEPK (50S ribosomal protein L28 OS=Pseudomonas putida (strain KT2440) GN=rpmB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 508
            RVC  TGK     N +S +N+KT +R   NLQ+ + W E+ KR+V+LR+S K ++ I+K G+DAV     +D+RK
Sbjct:    3 RVCQVTGKGPVTGNNISHANNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIDAVL----VDIRK 73          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_PSEPG (50S ribosomal protein L28 OS=Pseudomonas putida (strain GB-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 508
            RVC  TGK     N +S +N+KT +R   NLQ+ + W E+ KR+V+LR+S K ++ I+K G+DAV     +D+RK
Sbjct:    3 RVCQVTGKGPVTGNNISHANNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIDAVL----VDIRK 73          
BLAST of EY753463 vs. ExPASy Swiss-Prot
Match: RL28_PSEP1 (50S ribosomal protein L28 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpmB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  284 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 508
            RVC  TGK     N +S +N+KT +R   NLQ+ + W E+ KR+V+LR+S K ++ I+K G+DAV     +D+RK
Sbjct:    3 RVCQVTGKGPVTGNNISHANNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIDAVL----VDIRK 73          
The following BLAST results are available for this feature:
BLAST of EY753463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RL28_XANOM6.506e-1145.7150S ribosomal protein L28 OS=Xanthomonas oryzae pv... [more]
RL28_XANCP6.506e-1145.7150S ribosomal protein L28 OS=Xanthomonas campestri... [more]
RL28_XANCB6.506e-1145.7150S ribosomal protein L28 OS=Xanthomonas campestri... [more]
RL28_XANC86.506e-1145.7150S ribosomal protein L28 OS=Xanthomonas campestri... [more]
RL28_XANC56.506e-1145.7150S ribosomal protein L28 OS=Xanthomonas campestri... [more]
RL28_XANAC6.506e-1145.7150S ribosomal protein L28 OS=Xanthomonas axonopodi... [more]
RL28_BORPD6.506e-1147.1450S ribosomal protein L28 OS=Bordetella petrii (st... [more]
RL28_PSEPK8.497e-1144.0050S ribosomal protein L28 OS=Pseudomonas putida (s... [more]
RL28_PSEPG8.497e-1144.0050S ribosomal protein L28 OS=Pseudomonas putida (s... [more]
RL28_PSEP18.497e-1144.0050S ribosomal protein L28 OS=Pseudomonas putida (s... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-A12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753463 ID=EY753463; Name=EY753463; organism=Citrus sinensis; type=EST; length=823bp
ATTCCAAAACTGACCCACGCGTCCGCAAATACACTTGGAATCGAAAAGAT
GGCAACAATGCCCGACACCGGGAGGAGTTTTATTGGGAAACACTTCCAAT
CTACCCTGTCGCCGCCCACGTCTGTCTCCGAAGTCCATGGTTAAGGTAGT
CTCCTCCTCGGAAGAACTGGGTTTCGTTACTTCACAACTCAGTGGCATCA
AAATTTCGTACCGCCTACCTGACGTGGCCACACCCATTTCCTCTCGTCCT
TTCGCCCCGGGTCTTCAACCTATTGTTGCGCGTAGAGTGTGCCCCTTCAC
TGGAAAGAAATCAAACAAGGCAAACAAAGTTTCCTTCTCTAACCACAAGA
CAACTAAGCGGCAGTTTGTTAACCTACAGTATAAGAAGGTTTGGTGGGAG
GCCGGCAAGCGTTATGTGAAGCTGCGTTTGTCAACAAAGGCATTAAAGAC
GATAGAGAAAAATGGATTGGATGCTGTTGCTAAGAAGGCTAGAATAGATC
TTCGCAAGGAATGATATAGATGGTCTAACTATTTTTACCTATAGCTGTTG
GTAAAGCTTGTATGCTCACTGTTTCTCTCGAAATTTAATTTCATGTTGCA
CTGTATCTTCTTTTTGCTTGTTCTGTTGAATTCTTCCCAATTAAATGAGA
ATACTGATCATTAAAGCCTCAAGGTTTTTGTTAGTTCATTTTCGCATGTC
GTCATGAGGCTTTGCGTCGATGGCTCTATGAGCATTCAGCGCGTNGTGTA
TGATCTTCTATCAGAAGAAAGAGAATTGTAAAACACAGAACAGCATTTTT
GCTGAAAAAAAAAAAAAAAAAAA
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