EY753356

Overview
NameEY753356
Unique NameEY753356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 2.585e-64
Identity = 110/171 (64.33%), Postives = 138/171 (80.70%), Query Frame = 2
Query:  242 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAK 754
            +E VDPE+ DI+++EK RQ +GLELI SENFTS +VM A+GS M NKYSEGYPGARYYGGNE+ID  E LCQKRALE F LDP KWGVNVQ LSGSP+NF VYTA++  + RIM LDLP GGHL+HG+ T  +K+SA S FF+++PY+++ +TG +DYD LE++A L + K
Sbjct:   52 VEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMGLDLPDGGHLTHGFFTPARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPK 222          

HSP 2 Score: 34.6538 bits (78), Expect = 2.585e-64
Identity = 17/31 (54.84%), Postives = 18/31 (58.06%), Query Frame = 3
Query:  744 FRPKLIGAGARAYARLYDYERIPKVCNKQKA 836
            FRPK I AG   YAR  DYER  K+  K  A
Sbjct:  219 FRPKAIIAGVSCYARHLDYERFRKIATKAGA 249          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 4.396e-64
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            DPE+ ++++ EK RQ +GLELI SENF S + ++A+GS + NKYSEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N  VYTALL+PHDRIM LDLP GGHL+HGY +D K+ISA SIFFE+MPY+LN  TG +DY+ L  +A L + ++
Sbjct:   53 DPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRL 220          

HSP 2 Score: 41.2022 bits (95), Expect = 4.396e-64
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 3
Query:  744 FRPKLIGAGARAYARLYDYERIPKVCNKQKA 836
            FRP+LI AG  AYARL DY R+ +VC++ KA
Sbjct:  216 FRPRLIIAGTSAYARLIDYARMREVCDEVKA 246          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.337e-64
Identity = 117/185 (63.24%), Postives = 142/185 (76.76%), Query Frame = 2
Query:  239 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKIDWCWGQGLCTIV 793
            PL+  DP +A+I+ HE  RQ   + LI SENFTS +VM A+GSVM+NKYSEGYPGARYYGGN++ID  E+LCQ+RAL AF LDP KWGVNVQ LSGSP+N QVY A++ PH R+M LDLP GGHLSHGYQTDTKKISAVS +FE+MPYR++ +TG +DYD LE  A L + KI        C ++
Sbjct:   11 PLKEQDPTVAEIMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGARYYGGNKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPHGRLMGLDLPSGGHLSHGYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAYCRLI 195          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.271e-63
Identity = 105/168 (62.50%), Postives = 130/168 (77.38%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            DPE+ +++  EK RQ +GLELI SENF S + ++A+GS + NKYSEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N   YTALL+PHDRIM LDLP GGHL+HGY +D K+ISA SIFFE+MPY+LN  TG +DYD L  +A L + ++
Sbjct:   53 DPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRL 220          

HSP 2 Score: 40.0466 bits (92), Expect = 1.271e-63
Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = 3
Query:  744 FRPKLIGAGARAYARLYDYERIPKVCNKQKA 836
            F+P+LI AG  AYARL DY R+ +VC++ KA
Sbjct:  216 FKPRLIIAGTSAYARLIDYARMREVCDEVKA 246          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.028e-63
Identity = 115/176 (65.34%), Postives = 139/176 (78.98%), Query Frame = 2
Query:  230 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            ++  ++ VDPE+ADI+  E+ RQ   + LIPSENFTS +VM  +GS M NKYSEGYPG RYYGGNE ID AE+LCQKRALEAF LDP +WGVNVQ LSG+P+N   Y+A+L+  DRIM LDLPHGGHLSHGYQT T KIS +S +F+TMPYRLNE TG +DYD LEK+A L + K+
Sbjct:   35 ISKSVQDVDPEMADILNQERTRQKNSITLIPSENFTSKAVMDLLGSEMQNKYSEGYPGERYYGGNEIIDKAEALCQKRALEAFGLDPSQWGVNVQPLSGAPANLYAYSAILEVGDRIMGLDLPHGGHLSHGYQTKTTKISYISKYFQTMPYRLNEETGIIDYDTLEKNAQLFRPKV 210          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 2.818e-63
Identity = 112/178 (62.92%), Postives = 138/178 (77.53%), Query Frame = 2
Query:  224 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            + L  PL+  D E+ DII+ E  RQ  GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E+LCQKRAL+A+ LDP+ WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N  TGY+DYD LE++A L   K+
Sbjct:   20 QMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKL 197          

HSP 2 Score: 30.8018 bits (68), Expect = 2.818e-63
Identity = 14/31 (45.16%), Postives = 19/31 (61.29%), Query Frame = 3
Query:  744 FRPKLIGAGARAYARLYDYERIPKVCNKQKA 836
            F PKLI AG   Y+R  DY R+ K+ ++  A
Sbjct:  193 FHPKLIIAGTSCYSRNLDYGRLRKIADENGA 223          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 4.790e-63
Identity = 103/172 (59.88%), Postives = 131/172 (76.16%), Query Frame = 2
Query:  242 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            L   DPE+ ++++ EK RQ +GLELI SENF   + ++A+GS + NKYSEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N   YTALL+PHDRIM LDLP GGHL+HGY +D K++SA SIFFE+MPY+LN  TG +DY+ L  +A L + ++
Sbjct:   49 LSDTDPEMWELLQREKDRQCRGLELIASENFCIRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRL 220          

HSP 2 Score: 41.2022 bits (95), Expect = 4.790e-63
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 3
Query:  744 FRPKLIGAGARAYARLYDYERIPKVCNKQKA 836
            FRP+LI AG  AYARL DY R+ +VC++ KA
Sbjct:  216 FRPRLIIAGTSAYARLIDYARMREVCDEVKA 246          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 4.792e-63
Identity = 110/178 (61.80%), Postives = 138/178 (77.53%), Query Frame = 2
Query:  224 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            K L  PL+  D E+ +II+ E  RQ  GLEL  SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E+LCQKRAL+A++LDP+ WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ T  KKISA SIFFE+MPY++N  TGY++YD LE++A L   K+
Sbjct:   20 KMLAQPLKDSDVEVYNIIKKESNRQRVGLELFASENFASQAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTGKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKL 197          

HSP 2 Score: 31.187 bits (69), Expect = 4.792e-63
Identity = 14/31 (45.16%), Postives = 19/31 (61.29%), Query Frame = 3
Query:  744 FRPKLIGAGARAYARLYDYERIPKVCNKQKA 836
            F PKLI AG   Y+R  DY R+ K+ ++  A
Sbjct:  193 FHPKLIIAGTSCYSRNLDYARLRKIADENGA 223          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 4.792e-63
Identity = 111/178 (62.36%), Postives = 138/178 (77.53%), Query Frame = 2
Query:  224 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            K L+ PL+  D E+  II+ E  RQ  GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E LCQKRAL+A+ LDP+ WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+MPY++   TGY++YD LE++A+L   K+
Sbjct:   14 KMLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKL 191          

HSP 2 Score: 30.4166 bits (67), Expect = 4.792e-63
Identity = 14/31 (45.16%), Postives = 18/31 (58.06%), Query Frame = 3
Query:  744 FRPKLIGAGARAYARLYDYERIPKVCNKQKA 836
            F PKLI AG   Y+R  DY R+ K+ +   A
Sbjct:  187 FHPKLIIAGTSCYSRNLDYARLRKIADDNGA 217          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.071e-62
Identity = 111/178 (62.36%), Postives = 137/178 (76.97%), Query Frame = 2
Query:  224 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            K L  PL+  D E+ +II+ E  RQ  GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E LCQKRAL+ + LDPE WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+MPY++N  TGY++YD LE++A L   ++
Sbjct:   20 KMLAQPLKDNDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELEVLCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRL 197          

HSP 2 Score: 29.261 bits (64), Expect = 3.071e-62
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 3
Query:  744 FRPKLIGAGARAYARLYDYERIPKVCNKQKA 836
            F P+LI AG   Y+R  DY R+ K+ +   A
Sbjct:  193 FHPRLIIAGTSCYSRNLDYARLRKIADDNGA 223          
The following BLAST results are available for this feature:
BLAST of EY753356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_CAEEL2.585e-6464.33Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_HUMAN4.396e-6462.50Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYD_SCHPO5.337e-6463.24Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_BOVIN1.271e-6362.50Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_CANAL2.028e-6365.34Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_RABIT2.818e-6362.92Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYM_RABIT4.790e-6359.88Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_PONAB4.792e-6361.80Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_MOUSE4.792e-6362.36Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYC_SHEEP3.071e-6262.36Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-H01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753356 ID=EY753356; Name=EY753356; organism=Citrus sinensis; type=EST; length=853bp
CCACGCGTCCGCATAATCATACAACAAACAAAGAAGAAACAGACAACATC
TTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCTCTTCGC
AGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAATGGCTC
CTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAG
AGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTTGAGGTC
GTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACGACAATG
GAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTATCCGTGA
TGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGATATCCA
GGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGAATCCTT
ATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGG
GAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTCAAGTCTAC
ACTGCATTGTTAAAACCTCATGATAGGATCATGGCACTTGATCTTCCTCA
TGGTGGGCATCTCTCACACGGCTATCAGACAGATACCAAAAAGATATCTG
CAGTGTCCATATTTTTTGAGACAATGCCATACAGATTGAATGAGAGCACT
GGCTATCTAGACTATGACCCGTTGGAGAAAAGTGCCACCCTTCTTCAGGC
CAAAATTGATTGGTGCTGGGGCCAGGGCTTATGCACGATTGTACGATTAT
GAGCGTATTCCAAAGGTTTGCAACAAACAAAAAGCCATAAGGTCGGCGTA
ATG
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