EY753356

Overview
NameEY753356
Unique NameEY753356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.009e-54
Identity = 106/202 (52.48%), Postives = 140/202 (69.31%), Query Frame = 2
Query:  242 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKIDWCWGQGLCTIVRL*AYSKGLQQTKSHKV 844
            ++ VDPE+  I+  E++RQ   + LIPSENFTS +VM  +GS M NKYSEGYPG RYYGGN++ID AESLCQ RAL+ + LDPEKWGVNVQ+LSG+P+N   Y+A+++  DR+M LDLPHGGHLSHGYQ  +  KIS +S +F TMPY +N  TG +DYD L  ++ L + K+          +    AYS+ L   +  K+
Sbjct:   27 VQEVDPEMFRILSDERSRQKHSVTLIPSENFTSKAVMDLLGSEMQNKYSEGYPGERYYGGNQFIDKAESLCQARALDLYGLDPEKWGVNVQALSGAPANLYAYSAVMEVGDRLMGLDLPHGGHLSHGYQLPSGTKISYISKYFNTMPYHVNTETGIIDYDTLAMTSKLFRPKV---------IVAGTSAYSRKLDYARFRKI 219          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 7.761e-51
Identity = 97/167 (58.08%), Postives = 122/167 (73.05%), Query Frame = 2
Query:  239 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSAT 739
            PLE+ DPE+  +I  E  RQ K + LI SEN+   S M+A GSV+TNKYSEG  G RYYGG  ++D  E LCQKRALE F LDP+ WGVNVQ  SGSP+NF +YTA++ P  RIM LDLP GGHL+HGY+T T+KISA S++F++ PY +  S G +DY+ LEK+ T
Sbjct:   13 PLEMADPELHALICGEVERQKKTINLIASENYAHQSAMEACGSVLTNKYSEGRVGERYYGGTHWVDRIELLCQKRALELFGLDPDVWGVNVQPYSGSPANFAIYTAVVPPGGRIMGLDLPSGGHLTHGYKTKTRKISASSVYFDSRPYTVG-SNGLIDYEGLEKTFT 178          

HSP 2 Score: 24.6386 bits (52), Expect = 7.761e-51
Identity = 10/31 (32.26%), Postives = 17/31 (54.84%), Query Frame = 3
Query:  744 FRPKLIGAGARAYARLYDYERIPKVCNKQKA 836
            F P ++  G  AY+R  DY+R+  +  +  A
Sbjct:  180 FLPHILICGYSAYSRDIDYKRLQSIAGRNGA 210          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_THEPX (Serine hydroxymethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=glyA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.091e-39
Identity = 78/168 (46.43%), Postives = 107/168 (63.69%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            DPEIAD IE E  RQ   +ELI SENF S +VM+A+GS +TNKY+EGYP  RYYGG EY+D+AE L ++R  + F  +      NVQ  SG+ +N   Y AL+KP D ++ +DL HGGHL+HG      K++     +  + Y + E TGY+DYD +E+ A   + K+
Sbjct:   10 DPEIADAIEKELIRQRNKIELIASENFVSRAVMEAMGSPLTNKYAEGYPNKRYYGGCEYVDIAEELARERLKKLFGAE----HANVQPHSGAQANMAAYFALIKPGDTVLGMDLAHGGHLTHG-----SKVNFSGQIYNFVSYGVREDTGYIDYDEVERVAKKHKPKL 168          

HSP 2 Score: 31.9574 bits (71), Expect = 7.091e-39
Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNK 827
            +PKLI AGA AY R+ D++R  ++ +K
Sbjct:  165 KPKLIVAGASAYPRIIDFKRFREIADK 191          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_THEP3 (Serine hydroxymethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=glyA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.091e-39
Identity = 78/168 (46.43%), Postives = 107/168 (63.69%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            DPEIAD IE E  RQ   +ELI SENF S +VM+A+GS +TNKY+EGYP  RYYGG EY+D+AE L ++R  + F  +      NVQ  SG+ +N   Y AL+KP D ++ +DL HGGHL+HG      K++     +  + Y + E TGY+DYD +E+ A   + K+
Sbjct:   10 DPEIADAIEKELIRQRNKIELIASENFVSRAVMEAMGSPLTNKYAEGYPNKRYYGGCEYVDIAEELARERLKKLFGAE----HANVQPHSGAQANMAAYFALIKPGDTVLGMDLAHGGHLTHG-----SKVNFSGQIYNFVSYGVREDTGYIDYDEVERVAKKHKPKL 168          

HSP 2 Score: 31.9574 bits (71), Expect = 7.091e-39
Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNK 827
            +PKLI AGA AY R+ D++R  ++ +K
Sbjct:  165 KPKLIVAGASAYPRIIDFKRFREIADK 191          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_CHLTE (Serine hydroxymethyltransferase OS=Chlorobium tepidum GN=glyA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 9.230e-39
Identity = 84/175 (48.00%), Postives = 116/175 (66.29%), Query Frame = 2
Query:  233 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            N  L+ +DPE+ + I +E  RQ + LELI SENFTS +VM+A GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  A+LKP D IM LDL HGGHL+HG      K++    FF+   Y +++ TG +D + +E+ A  ++ K+
Sbjct:    3 NDILKRLDPEVFEAIANETKRQTETLELIASENFTSKAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFAVLKPGDAIMGLDLSHGGHLTHG-----SKVNFSGQFFDAHSYGVDKETGIIDMNKVEEMARRVKPKL 168          

HSP 2 Score: 27.7202 bits (60), Expect = 9.230e-39
Identity = 13/34 (38.24%), Postives = 22/34 (64.71%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNKQKAIRSA 848
            +PKLI  GA AY++ +D++   +V +K  A+  A
Sbjct:  165 KPKLIITGASAYSQGFDFKAFREVADKVGALLMA 198          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_ACIBL (Serine hydroxymethyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glyA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.203e-38
Identity = 80/170 (47.06%), Postives = 111/170 (65.29%), Query Frame = 2
Query:  227 QLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSA 736
            +++  L   DP+IA+ I +E+ RQ +GLELI SENF S +V+QA GSV TNKY+EGYPG RYYGG EY D+ E+L + RA E F  +      NVQ  SGS +N + Y A+L+P D I+ L+L HGGHL+HG+      ++     ++ +PY + + T  +DYD LEK A
Sbjct:    4 RMSQSLNEEDPQIAEAIANEERRQHEGLELIASENFVSEAVLQAAGSVFTNKYAEGYPGKRYYGGCEYADVVENLARDRAKELFGAE----HANVQPHSGSSANMEAYGAILQPGDTILGLNLAHGGHLTHGH-----PLNFSGKTYKIVPYGVTKETETIDYDELEKLA 164          

HSP 2 Score: 30.0314 bits (66), Expect = 1.203e-38
Identity = 11/30 (36.67%), Postives = 21/30 (70.00%), Query Frame = 3
Query:  750 PKLIGAGARAYARLYDYERIPKVCNKQKAI 839
            PK+I  G  AY R++D++R+ ++ +K  A+
Sbjct:  169 PKVIVGGGSAYPRIFDFKRMREIADKAGAL 198          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.567e-38
Identity = 83/172 (48.26%), Postives = 115/172 (66.86%), Query Frame = 2
Query:  242 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            L+ +DPE+ + I +E  RQ + LELI SENFTS +VM+A GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  A+LKP D IM LDL HGGHL+HG      K++    FF+   Y +++ TG +D + +E+ A  ++ K+
Sbjct:    6 LKRLDPEVFEAIANETRRQTETLELIASENFTSTAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFAVLKPGDSIMGLDLSHGGHLTHG-----SKVNFSGQFFDAHSYGVDKETGIIDMNAVEEMALKVKPKL 168          

HSP 2 Score: 26.5646 bits (57), Expect = 1.567e-38
Identity = 12/34 (35.29%), Postives = 21/34 (61.76%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNKQKAIRSA 848
            +PKLI  GA AY++ +D++   ++ +K  A   A
Sbjct:  165 KPKLIITGASAYSQGFDFKAFREIADKVGAFLMA 198          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.043e-38
Identity = 78/168 (46.43%), Postives = 108/168 (64.29%), Query Frame = 2
Query:  233 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSA 736
            N  L   DPE+A  IE E  RQ + +ELI SENF S +V++A GS++TNKY+EGYPG RYYGG E++D+AESL   RA + F  D      NVQ  SG+ +NF VY ALL+P D+I+ ++L HGGHL+HG       ++    +F  + Y + E TG ++Y+ L + A
Sbjct:    3 NGKLAQTDPELAKAIELEHQRQQRNIELIASENFVSPAVLEAQGSILTNKYAEGYPGKRYYGGCEFVDIAESLAISRAKKLFGAD----HANVQPHSGAQANFAVYFALLQPGDKILGMNLAHGGHLTHG-----SPVNVSGKYFNVVAYGVEEDTGCINYEKLREIA 161          

HSP 2 Score: 30.4166 bits (67), Expect = 2.043e-38
Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNK 827
            +PK+I AGA AYAR  D+++I ++  +
Sbjct:  165 KPKMIVAGASAYARAIDFKKIGEIAKE 191          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_THETN (Serine hydroxymethyltransferase OS=Thermoanaerobacter tengcongensis GN=glyA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.467e-38
Identity = 78/168 (46.43%), Postives = 107/168 (63.69%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            DPEIA++I  E  RQ   +ELI SENF S +VM+A+G+ +TNKY+EGYPG RYYGG EY+DMAE L ++R  + F  +      NVQ  SG+ +N   Y ALLKP D ++ +DL HGGHL+HG      K++     +  + Y + E TGY+DYD +E  A   + K+
Sbjct:   10 DPEIAEVILKELNRQRNKIELIASENFVSRAVMEAMGTPLTNKYAEGYPGRRYYGGCEYVDMAEELARERLKKLFGAE----HANVQPHSGAQANMAAYFALLKPGDTVLGMDLAHGGHLTHG-----SKVNFSGQIYNFVSYGVREDTGYIDYDQVEDLAKKHKPKL 168          

HSP 2 Score: 30.8018 bits (68), Expect = 3.467e-38
Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNK 827
            +PKLI AGA AY R+ D+++  ++ +K
Sbjct:  165 KPKLIVAGASAYPRIIDFKKFREIADK 191          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_SOLUE (Serine hydroxymethyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.882e-38
Identity = 82/182 (45.05%), Postives = 115/182 (63.19%), Query Frame = 2
Query:  212 VTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            +T  ++++  L  VDPEI   I+HE ARQ   LELI SENFTS +V++A GSV TNKY+EGYPG RYYGG EY D+ E+L ++RA + F  +     VNVQ  SGS +N   Y A++ P D +M L+L HGGHL+HG+      ++     ++ +PY + +    +DYD +EK A   Q K+
Sbjct:    1 MTESQRMSRTLAEVDPEIYQAIQHETARQDGQLELIASENFTSEAVLEATGSVFTNKYAEGYPGKRYYGGCEYTDVVENLARERASKLFGAE----YVNVQPHSGSQANQAAYGAVVSPGDTVMGLNLAHGGHLTHGH-----ALNFSGKTYKIVPYNVRKEDELIDYDEVEKLAREHQPKM 173          

HSP 2 Score: 30.0314 bits (66), Expect = 5.882e-38
Identity = 13/31 (41.94%), Postives = 20/31 (64.52%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNKQKAI 839
            +PK+I AGA AY R+ D+ R  K+ +   A+
Sbjct:  170 QPKMIIAGASAYPRIIDFARFRKIADAVGAV 200          
The following BLAST results are available for this feature:
BLAST of EY753356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_CANGA1.009e-5452.48Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_ENCCU7.761e-5158.08Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA_THEPX7.091e-3946.43Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_THEP37.091e-3946.43Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_CHLTE9.230e-3948.00Serine hydroxymethyltransferase OS=Chlorobium tepi... [more]
GLYA_ACIBL1.203e-3847.06Serine hydroxymethyltransferase OS=Acidobacteria b... [more]
GLYA_CHLP81.567e-3848.26Serine hydroxymethyltransferase OS=Chlorobaculum p... [more]
GLYA_DESRM2.043e-3846.43Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_THETN3.467e-3846.43Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_SOLUE5.882e-3845.05Serine hydroxymethyltransferase OS=Solibacter usit... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-H01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753356 ID=EY753356; Name=EY753356; organism=Citrus sinensis; type=EST; length=853bp
CCACGCGTCCGCATAATCATACAACAAACAAAGAAGAAACAGACAACATC
TTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCTCTTCGC
AGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAATGGCTC
CTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAG
AGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTTGAGGTC
GTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACGACAATG
GAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTATCCGTGA
TGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGATATCCA
GGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGAATCCTT
ATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGG
GAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTCAAGTCTAC
ACTGCATTGTTAAAACCTCATGATAGGATCATGGCACTTGATCTTCCTCA
TGGTGGGCATCTCTCACACGGCTATCAGACAGATACCAAAAAGATATCTG
CAGTGTCCATATTTTTTGAGACAATGCCATACAGATTGAATGAGAGCACT
GGCTATCTAGACTATGACCCGTTGGAGAAAAGTGCCACCCTTCTTCAGGC
CAAAATTGATTGGTGCTGGGGCCAGGGCTTATGCACGATTGTACGATTAT
GAGCGTATTCCAAAGGTTTGCAACAAACAAAAAGCCATAAGGTCGGCGTA
ATG
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