EY753356

Overview
NameEY753356
Unique NameEY753356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_THEEB (Serine hydroxymethyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.733e-30
Identity = 75/171 (43.86%), Postives = 101/171 (59.06%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKIDWC 766
            DP +A++++ E  RQ + LELI SENFTS +VM A G+V+TNKY+EG PG RYYGG E++D  E L   RA E F         NVQ  SG+ +NF V+ ALL P D IM +DL HGGHL+HG       ++    +F  + Y ++  T  LD D +   A   + K+  C
Sbjct:   11 DPLVAEMVQREVQRQQQHLELIASENFTSPAVMAAQGTVLTNKYAEGLPGKRYYGGCEFVDEVEQLAIDRAKELFGAA----HANVQPHSGAQANFAVFLALLNPGDTIMGMDLSHGGHLTHG-----SPVNVSGKWFNVVHYGVHPETERLDMDQVRDLARQHRPKLIIC 172          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_PARDP (Serine hydroxymethyltransferase OS=Paracoccus denitrificans (strain Pd 1222) GN=glyA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.207e-30
Identity = 71/165 (43.03%), Postives = 95/165 (57.58%), Query Frame = 2
Query:  242 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSA 736
            L+  DP+I   I  E  RQ   +ELI SEN  S +V++A GSV+TNKY+EGYPG RYYGG +Y+D+ E L  +RA + F  +      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + +    LD D + K A
Sbjct:   11 LDSRDPDIFGAIRKELGRQRDEIELIASENIVSRAVLEAQGSVLTNKYAEGYPGKRYYGGCQYVDIVEELAIERAKQLFGCE----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVRQQDQLLDMDEIRKKA 166          

HSP 2 Score: 29.261 bits (64), Expect = 2.207e-30
Identity = 14/38 (36.84%), Postives = 22/38 (57.89%), Query Frame = 3
Query:  714 MTRWRKVPPFFRPKLIGAGARAYARLYDYERIPKVCNK 827
            M   RK     +PKLI AG  AY+R++D+    K+ ++
Sbjct:  159 MDEIRKKAHEHKPKLILAGGTAYSRVWDWAEFRKIADE 196          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA2_ERWCT (Serine hydroxymethyltransferase 2 OS=Erwinia carotovora subsp. atroseptica GN=glyA2 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.207e-30
Identity = 72/168 (42.86%), Postives = 99/168 (58.93%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            DPE+AD I HE+ RQ   +ELI SEN+ S  VM    SV TNKY+EGY G RYY G EY+D+AE L  +RA   F  D      NVQ  +G+ +N  V+ AL  P D +M ++L  GGHL+HG  ++          ++ +PY L+  TG +DYD +E+ A   + K+
Sbjct:   12 DPELADAILHEEDRQETHVELIASENYASPLVMAIQNSVFTNKYAEGYLGKRYYSGCEYVDVAERLAIERAKVLFDCD----YANVQPHAGAQANAAVFLALTNPGDTVMGMNLAQGGHLTHGNPSNFS-----GRHYKIVPYGLDSETGLIDYDEMERIALETRPKM 170          

HSP 2 Score: 25.7942 bits (55), Expect = 2.207e-30
Identity = 12/31 (38.71%), Postives = 19/31 (61.29%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNKQKAI 839
            RPK++  G  AY+R  D+ R+  + +K  AI
Sbjct:  167 RPKMLIGGFSAYSRHKDWARMRTIADKVGAI 197          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_MYCAP (Serine hydroxymethyltransferase OS=Mycoplasma agalactiae (strain PG2) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.207e-30
Identity = 76/171 (44.44%), Postives = 101/171 (59.06%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKIDWC 766
            D EI   I +E  RQ + +ELI SEN+ S  V+ AVGSV+TNKY EGYPG RYYGG E +D+ E+L  +R  + F +       NVQ  SGS +N      L    D+IM LDL  GGHL+HGY     KIS   IF+ ++ Y +NE  G LDY+ +++ A   + K+  C
Sbjct:    9 DKEIEHAINNEVDRQNEHIELIASENYVSEDVLTAVGSVLTNKYGEGYPGKRYYGGCENVDVVETLAIERLKKLFGVK----FANVQPYSGSVANAAALATLASQGDKIMGLDLASGGHLTHGY-----KISFSGIFYNSITYSVNED-GILDYEAIKELAIKEKPKVIIC 169          

HSP 2 Score: 24.2534 bits (51), Expect = 2.207e-30
Identity = 8/26 (30.77%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCN 824
            +PK+I  G  AY+R+ D+++  ++ +
Sbjct:  163 KPKVIICGYSAYSRIVDFKKFREIAD 188          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_STRSV (Serine hydroxymethyltransferase OS=Streptococcus sanguinis (strain SK36) GN=glyA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.207e-30
Identity = 70/168 (41.67%), Postives = 98/168 (58.33%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            DPEI + +  E+ RQ   +ELI SEN  S +VM A GS++TNKY+EGYPG RYYGG + +D+ E L  +RA E F         NVQ  SGS +N   Y AL++P D +M +DL  GGHL+HG       +S     +  + Y ++  T  LD+D + + A  +Q K+
Sbjct:   12 DPEIWEAVAKEEERQQHNIELIASENVVSKAVMAAQGSILTNKYAEGYPGRRYYGGTDVVDVIEGLAIERAKEIFGAK----FANVQPHSGSQANCAAYMALIEPGDTVMGMDLSAGGHLTHG-----ASVSFSGQTYNFVSYSVDPETELLDFDAILQQAKEVQPKL 170          

HSP 2 Score: 26.9498 bits (58), Expect = 2.207e-30
Identity = 10/26 (38.46%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCN 824
            +PKLI AGA AY+ + D+ +  ++ +
Sbjct:  167 QPKLIVAGASAYSHIIDFSKFREIAD 192          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_BUCA5 (Serine hydroxymethyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.208e-30
Identity = 73/157 (46.50%), Postives = 97/157 (61.78%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPL 724
            DP++   IE EK RQ   +ELI SEN+TS  VM   GS +TNKY+EGYPG RYYGG EY+D+ E L  +RA + F  D      NVQ  SGS +NF VYTALL P D I+ + L HGGHL+HG       ++     +  + Y ++E+ G ++Y+ L
Sbjct:   12 DPKLWFAIEQEKKRQENHIELIASENYTSNYVMDVQGSQLTNKYAEGYPGKRYYGGCEYVDIIEELAIERAKKLFNAD----YANVQPHSGSQANFSVYTALLNPGDTILGMKLSHGGHLTHG-----SSVNFSGKMYNVISYGVDEN-GEINYEEL 158          

HSP 2 Score: 21.9422 bits (45), Expect = 2.208e-30
Identity = 8/31 (25.81%), Postives = 20/31 (64.52%), Query Frame = 3
Query:  744 FRPKLIGAGARAYARLYDYERIPKVCNKQKA 836
            ++PK+I  G  AY+ + +++++  + +K  A
Sbjct:  165 YKPKMIIGGFSAYSGICNWKKMRFIADKADA 195          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_RUTMC (Serine hydroxymethyltransferase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=glyA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.208e-30
Identity = 77/162 (47.53%), Postives = 94/162 (58.02%), Query Frame = 2
Query:  242 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLE 727
            L  VD EI   I  EK RQ   +ELI SEN+TS +VM+A GS +TNKY+EGYP  RYYGG EY+D  E L   RA   F  D      NVQ  SGS +N  V+ ALL P D I+ + L HGGHL+HG        S     F  + Y LNE TG ++Y+ +E
Sbjct:    8 LAKVDIEIHQAITQEKVRQEAHIELIASENYTSPAVMEAQGSQLTNKYAEGYPRKRYYGGCEYVDTVEQLAIDRAKVLFGAD----YANVQPHSGSQANAAVFQALLVPGDTILGMSLVHGGHLTHGAAP-----SFSGKNFNAIQYGLNEKTGEINYEQVE 160          

HSP 2 Score: 24.2534 bits (51), Expect = 2.208e-30
Identity = 9/26 (34.62%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCN 824
            +PK+I AG  AY+R+ D++   ++ +
Sbjct:  167 KPKMIIAGFSAYSRVVDWQYFREIAD 192          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA3_PSEAE (Serine hydroxymethyltransferase 3 OS=Pseudomonas aeruginosa GN=glyA3 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.208e-30
Identity = 71/161 (44.10%), Postives = 98/161 (60.87%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSA 736
            D E+   +E E  RQ + +ELI SEN+TS +VM+A GSV+TNKY+EGYP  RYYGG EY+D+ E L   RA + F  D      NVQ  +GS +N  VY ALL   D I+ + L HGGHL+HG       +S+    +  + Y + ++ G +DYD +E+ A
Sbjct:   12 DAELFAAMEQEAQRQEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYPHKRYYGGCEYVDIVEQLAIDRAKQLFGAD----YANVQPHAGSQANAAVYLALLSAGDTILGMSLAHGGHLTHG-----ASVSSSGKLYNAVQYGI-DANGLIDYDEVERLA 162          

HSP 2 Score: 26.1794 bits (56), Expect = 2.208e-30
Identity = 10/27 (37.04%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNK 827
            +PK+I AG  AY+++ D+ R   + +K
Sbjct:  166 KPKMIVAGFSAYSQVLDFARFRAIADK 192          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_BACP2 (Serine hydroxymethyltransferase OS=Bacillus pumilus (strain SAFR-032) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.208e-30
Identity = 67/161 (41.61%), Postives = 102/161 (63.35%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDY-DPLEKS 733
            D ++   I+ E+ RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ E + + RA E F  +     VNVQ  SG+ +N  VY  +L+  D ++ ++L HGGHL+HG       ++   + +  + Y +++ T ++DY D LEK+
Sbjct:    8 DAQVFKAIQLERKRQQDKIELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRAKEIFGAE----YVNVQPHSGAQANMAVYFTILEHGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVEYGVDKETQHIDYQDVLEKA 159          

HSP 2 Score: 27.7202 bits (60), Expect = 2.208e-30
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNK 827
            +PKLI AGA AY R  D+++  ++ ++
Sbjct:  163 KPKLIVAGASAYPRQIDFKKFREIADE 189          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_XYLFM (Serine hydroxymethyltransferase OS=Xylella fastidiosa (strain M12) GN=glyA PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.263e-30
Identity = 80/189 (42.33%), Postives = 106/189 (56.08%), Query Frame = 2
Query:  233 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSA------------TLLQAKIDW 763
            +A L++ DPE+A  I  E  RQ   +ELI SEN+ S  VMQ  GS +TNKY+EGY G RYYGG EY+D+AE L  +RA + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG       ++     F  + Y +N + G +DY+ +E  A            +    KIDW
Sbjct:    5 DARLDMYDPELAKAIAAEVRRQEDHVELIASENYCSTLVMQVQGSQLTNKYAEGYSGKRYYGGCEYVDIAEQLAIERAKQLFGAD----YANVQPHSGSQANQAVYFALLQPGDTILGMSLAHGGHLTHG-----ANVNVSGKLFNAVQYGVN-AQGLIDYEAVESLALEHRPKMVVAGFSAYSQKIDW 183          
The following BLAST results are available for this feature:
BLAST of EY753356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_THEEB1.733e-3043.86Serine hydroxymethyltransferase OS=Thermosynechoco... [more]
GLYA_PARDP2.207e-3043.03Serine hydroxymethyltransferase OS=Paracoccus deni... [more]
GLYA2_ERWCT2.207e-3042.86Serine hydroxymethyltransferase 2 OS=Erwinia carot... [more]
GLYA_MYCAP2.207e-3044.44Serine hydroxymethyltransferase OS=Mycoplasma agal... [more]
GLYA_STRSV2.207e-3041.67Serine hydroxymethyltransferase OS=Streptococcus s... [more]
GLYA_BUCA52.208e-3046.50Serine hydroxymethyltransferase OS=Buchnera aphidi... [more]
GLYA_RUTMC2.208e-3047.53Serine hydroxymethyltransferase OS=Ruthia magnific... [more]
GLYA3_PSEAE2.208e-3044.10Serine hydroxymethyltransferase 3 OS=Pseudomonas a... [more]
GLYA_BACP22.208e-3041.61Serine hydroxymethyltransferase OS=Bacillus pumilu... [more]
GLYA_XYLFM2.263e-3042.33Serine hydroxymethyltransferase OS=Xylella fastidi... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-H01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753356 ID=EY753356; Name=EY753356; organism=Citrus sinensis; type=EST; length=853bp
CCACGCGTCCGCATAATCATACAACAAACAAAGAAGAAACAGACAACATC
TTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCTCTTCGC
AGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAATGGCTC
CTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAG
AGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTTGAGGTC
GTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACGACAATG
GAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTATCCGTGA
TGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGATATCCA
GGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGAATCCTT
ATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGG
GAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTCAAGTCTAC
ACTGCATTGTTAAAACCTCATGATAGGATCATGGCACTTGATCTTCCTCA
TGGTGGGCATCTCTCACACGGCTATCAGACAGATACCAAAAAGATATCTG
CAGTGTCCATATTTTTTGAGACAATGCCATACAGATTGAATGAGAGCACT
GGCTATCTAGACTATGACCCGTTGGAGAAAAGTGCCACCCTTCTTCAGGC
CAAAATTGATTGGTGCTGGGGCCAGGGCTTATGCACGATTGTACGATTAT
GAGCGTATTCCAAAGGTTTGCAACAAACAAAAAGCCATAAGGTCGGCGTA
ATG
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