EY753356

Overview
NameEY753356
Unique NameEY753356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_GEOTN (Serine hydroxymethyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.691e-35
Identity = 72/168 (42.86%), Postives = 105/168 (62.50%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            DP++   IE E+ RQ   +ELI SENF S +VM+A GSVMTNKY+EGYPG RYYGG EY+D+ E L ++RA + F  +      NVQ  SG+ +N  VY  +LKP D ++ ++L HGGHL+HG       ++   + +  + Y ++  T  +DYD + + A L + K+
Sbjct:    8 DPQVFATIEQERKRQHAKIELIASENFVSRAVMEAQGSVMTNKYAEGYPGRRYYGGCEYVDVVEDLARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLKPGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVEYGVDPETHVIDYDDVREKARLHRPKL 166          

HSP 2 Score: 29.261 bits (64), Expect = 5.691e-35
Identity = 12/27 (44.44%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNK 827
            RPKLI AGA AY R+ D+ +  ++ ++
Sbjct:  163 RPKLIVAGASAYPRVIDFAKFREIADE 189          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_GEOMG (Serine hydroxymethyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.798e-35
Identity = 77/165 (46.67%), Postives = 106/165 (64.24%), Query Frame = 2
Query:  242 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSA 736
            LE  DP +A+ I HE  RQ   LELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG  ++D+ E+L  +RA E F  D      NVQ  SGS +N  VY ++LKP D I+ ++L HGGHL+HG       ++    FF  +PY +++ T  +D++ +E+ A
Sbjct:    4 LETFDPAVAEAIRHETERQEYNLELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGAD----HANVQPHSGSQANMAVYFSVLKPGDTILGMNLSHGGHLTHG-----SPVNFSGRFFNVVPYGVSQETETIDFNEVERLA 159          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.798e-35
Identity = 80/172 (46.51%), Postives = 104/172 (60.47%), Query Frame = 2
Query:  242 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            L+  DPEI  +I+ E+ RQ   + LI SEN+ S +V++A GS++TNKYSEGYPG RYY G + ID  ES+   RA   F  +     VNVQ  SGSP+N  VY A LKP D I+ + LPHGGHL+HG      K+S    +F  + Y LNE  G LDY+ +   A   + KI
Sbjct:   13 LQQQDPEIFSLIQQEEVRQHNKIRLIASENYVSSAVLEATGSILTNKYSEGYPGKRYYEGQQLIDQIESIAIDRAKAVFGAE----HVNVQPYSGSPANMAVYLAFLKPGDTILGMALPHGGHLTHG-----SKVSISGKYFNAVSYALNEE-GILDYEEIRNKALECKPKI 174          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_FLAPJ (Serine hydroxymethyltransferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 7.410e-35
Identity = 76/168 (45.24%), Postives = 100/168 (59.52%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSATLLQAKI 757
            D +I D+I  E+ RQ  GLELI SENF S  VM+A GSV+TNKY+EGYPG RYYGG E +D+ E +   RA + F  +      NVQ  SGS +N  V+ A LKP D I+  DL HGGHL+HG       ++     +    Y +   TG L+YD +++ AT  Q K+
Sbjct:    4 DQQIFDLIIEEQDRQIHGLELIASENFVSDQVMEAAGSVLTNKYAEGYPGKRYYGGCEVVDVIEQIAIDRAKDLFGAE----YANVQPHSGSQANTAVFAACLKPGDTILGFDLSHGGHLTHG-----SPVNFSGKLYNPTFYGVEPETGMLNYDKIQEIATKEQPKL 162          

HSP 2 Score: 32.7278 bits (73), Expect = 7.410e-35
Identity = 17/34 (50.00%), Postives = 22/34 (64.71%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNKQKAIRSA 848
            +PKLI AGA AY+R  D+ER  K+ +   AI  A
Sbjct:  159 QPKLIIAGASAYSRDMDFERFRKIADSVGAILMA 192          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBH (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 7.412e-35
Identity = 70/165 (42.42%), Postives = 106/165 (64.24%), Query Frame = 2
Query:  242 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSA 736
            L+  DPE+ D+I+ E+ RQ   +ELI SENFTS+SVM+++GS++TNKY+EGYP  RYYGG E++D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+  D I+ +DL HGGHL+HG       ++     +  + Y +++ T  +DY+ L+K A
Sbjct:    6 LKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMESMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYEKLKKIA 161          

HSP 2 Score: 33.8834 bits (76), Expect = 7.412e-35
Identity = 12/27 (44.44%), Postives = 22/27 (81.48%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNK 827
            RPK+I +GA AY R+ D+++I ++C++
Sbjct:  165 RPKMIVSGASAYPRIIDFQKIREICDE 191          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB1 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 7.412e-35
Identity = 70/165 (42.42%), Postives = 106/165 (64.24%), Query Frame = 2
Query:  242 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSA 736
            L+  DPE+ D+I+ E+ RQ   +ELI SENFTS+SVM+++GS++TNKY+EGYP  RYYGG E++D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+  D I+ +DL HGGHL+HG       ++     +  + Y +++ T  +DY+ L+K A
Sbjct:    6 LKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMESMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYEKLKKIA 161          

HSP 2 Score: 33.8834 bits (76), Expect = 7.412e-35
Identity = 12/27 (44.44%), Postives = 22/27 (81.48%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNK 827
            RPK+I +GA AY R+ D+++I ++C++
Sbjct:  165 RPKMIVSGASAYPRIIDFQKIREICDE 191          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_UNCTG (Serine hydroxymethyltransferase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.257e-34
Identity = 73/158 (46.20%), Postives = 98/158 (62.03%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLE 727
            D EI D++  E  RQ + +ELI SEN  S SVM+A GS +TNKY+EGYPG RYYGG E +D+AE++  +RA + F         NVQ  SG+ +NF +  ALLKP D IM L L HGGHL+HG        +    +F  + Y ++E TG +DY+ +E
Sbjct:    8 DIEIHDMLVKELKRQRETIELIASENIASQSVMEAQGSCLTNKYAEGYPGKRYYGGCEVVDIAETIAIERAKKLFNAR----FANVQPHSGAQANFAILLALLKPGDTIMGLSLSHGGHLTHG-----SPFNVSGKWFNVISYSVSEKTGCIDYNEIE 156          

HSP 2 Score: 34.6538 bits (78), Expect = 1.257e-34
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  747 RPKLIGAGARAYARLYDYERIPKVCNKQKA 836
            +PKLI +GA AY+R++D+ERI  +  K  A
Sbjct:  163 KPKLIISGASAYSRIWDWERISGIAKKVSA 192          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_SHISS (Serine hydroxymethyltransferase OS=Shigella sonnei (strain Ss046) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.514e-34
Identity = 79/161 (49.07%), Postives = 104/161 (64.60%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSA 736
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L HGGHL+HG       ++     +  +PY + ++TG++DY  LEK A
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGI-DATGHIDYADLEKQA 162          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_SHIFL (Serine hydroxymethyltransferase OS=Shigella flexneri GN=glyA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.514e-34
Identity = 79/161 (49.07%), Postives = 104/161 (64.60%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSA 736
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L HGGHL+HG       ++     +  +PY + ++TG++DY  LEK A
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGI-DATGHIDYADLEKQA 162          
BLAST of EY753356 vs. ExPASy Swiss-Prot
Match: GLYA_SHIF8 (Serine hydroxymethyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.514e-34
Identity = 79/161 (49.07%), Postives = 104/161 (64.60%), Query Frame = 2
Query:  254 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYLDYDPLEKSA 736
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L HGGHL+HG       ++     +  +PY + ++TG++DY  LEK A
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGI-DATGHIDYADLEKQA 162          
The following BLAST results are available for this feature:
BLAST of EY753356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_GEOTN5.691e-3542.86Serine hydroxymethyltransferase OS=Geobacillus the... [more]
GLYA_GEOMG6.798e-3546.67Serine hydroxymethyltransferase OS=Geobacter metal... [more]
GLYA_DESPS6.798e-3546.51Serine hydroxymethyltransferase OS=Desulfotalea ps... [more]
GLYA_FLAPJ7.410e-3545.24Serine hydroxymethyltransferase OS=Flavobacterium ... [more]
GLYA_CLOBH7.412e-3542.42Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB17.412e-3542.42Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_UNCTG1.257e-3446.20Serine hydroxymethyltransferase OS=Uncultured term... [more]
GLYA_SHISS1.514e-3449.07Serine hydroxymethyltransferase OS=Shigella sonnei... [more]
GLYA_SHIFL1.514e-3449.07Serine hydroxymethyltransferase OS=Shigella flexne... [more]
GLYA_SHIF81.514e-3449.07Serine hydroxymethyltransferase OS=Shigella flexne... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-H01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753356 ID=EY753356; Name=EY753356; organism=Citrus sinensis; type=EST; length=853bp
CCACGCGTCCGCATAATCATACAACAAACAAAGAAGAAACAGACAACATC
TTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCTCTTCGC
AGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAATGGCTC
CTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAG
AGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTTGAGGTC
GTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACGACAATG
GAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTATCCGTGA
TGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGATATCCA
GGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGAATCCTT
ATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGG
GAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTCAAGTCTAC
ACTGCATTGTTAAAACCTCATGATAGGATCATGGCACTTGATCTTCCTCA
TGGTGGGCATCTCTCACACGGCTATCAGACAGATACCAAAAAGATATCTG
CAGTGTCCATATTTTTTGAGACAATGCCATACAGATTGAATGAGAGCACT
GGCTATCTAGACTATGACCCGTTGGAGAAAAGTGCCACCCTTCTTCAGGC
CAAAATTGATTGGTGCTGGGGCCAGGGCTTATGCACGATTGTACGATTAT
GAGCGTATTCCAAAGGTTTGCAACAAACAAAAAGCCATAAGGTCGGCGTA
ATG
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