EY753338

Overview
NameEY753338
Unique NameEY753338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY753338 vs. ExPASy Swiss-Prot
Match: DPYD_BOVIN (Dihydropyrimidine dehydrogenase [NADP+] OS=Bos taurus GN=DPYD PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.988e-18
Identity = 62/194 (31.96%), Postives = 96/194 (49.48%), Query Frame = 2 
Query:  230 ASASAEP------------DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIXLISDRPLEQC*KNLNN*KHCIRDRFSLLQLWKSITKLHGEELIDRVEETGIDAIEVNFSWSHGMPERKMGAAVGQNCRLLKKFWGGIKQ 760
            AS SA+P            D+S+ +  L+  NPF + S  P T+ ++++RAF+ GW   + KT SLD   V NV+PR  R      G+  G + G     + NI LIS++      +++   K    D   +  +  S  +    EL  + E +G DA+E+N S  HGM ER MG A GQ+  L++     ++Q
Sbjct:  513 ASVSAKPELPLFYTPIDLVDISVEMAALKFTNPFGLASATPTTSSSMIRRAFEAGWAFALTKTFSLDKDIVTNVSPRIIR------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNRNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQ 700
The following BLAST results are available for this feature:
BLAST of EY753338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DPYD_BOVIN5.988e-1831.96Dihydropyrimidine dehydrogenase [NADP+] OS=Bos tau... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-F07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753338 ID=EY753338; Name=EY753338; organism=Citrus sinensis; type=EST; length=871bp
CCACGCGTCCGGTAAATTATTATTAAGTCGAATTCATAAAGCTTCTCTCT
GATCCCAAAAGAATCTTTAGAACTGAGTGAGATTCAATCTTGTTCATTTC
CTTTTATCTCCATCCATGGCATCATTGAATTTGAATCAGATCATAAGCAA
CAGCAACACCTCCTTTGCTGTGAATCGTCGGCCAGGATTGCGCTTGCCTA
GTCGAATTGGGTTGAGGGTTTTGGCTTCTGCTTCAGCTTCAGCAGAGCCA
GACTTGAGTATTACAGTAAATGGACTGCAGATGCCGAACCCGTTTGTTAT
CGGATCGGGTCCACCTGGCACCAACTACACTGTCATGAAGCGAGCCTTTG
ATGAAGGCTGGGGTGCTGTTGTTGCTAAAACTGTATCATTAGATGCAGCA
AAAGTTATAAACGTAACTCCTCGATATGCCCGCCTGCGAGCAGGTGCGAA
TGGATCAGCCAAAGGGCAAATTATTGGGTGGGAGAACATANAACTCATTA
GCGATCGGCCGCTTGAACAATGTTGAAAGAATTTAAACAATTAAAAGCAT
TGTATCCGGGATAGATTCTCATTGCTTCAATTATGGAAGAGTATAACAAA
GCTGCATGGGGAGGAGCTTATTGATCGAGTGGAAGAAACAGGAATTGATG
CAATAGAAGTTAATTTTTCATGGTCCCATGGCATGCCGGAACGTAAAATG
GGGGCTGCTGTTGGCCAAAATTGTAGGCTTTTGAAAAAATTTTGGGGTGG
GATAAAGCAAAAGCTACTGTTCCTGGTGGGGCAAAGAGACTCCTAACATA
CGGACCTTACAAGAGTAGCCCTTGCGAAGAGAAAACTTTGGGTGACTTCA
AATTTTAGGTCAAAAAAGGAA
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