EY753288

Overview
NameEY753288
Unique NameEY753288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753288 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.010e-14
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            FVGD++SSIFDA AGIAL+ KFVKLVSWYDNE+GYS RV+DL+ + +K
Sbjct:  285 FVGDAQSSIFDAAAGIALNDKFVKLVSWYDNEFGYSNRVIDLLAYAAK 332          
BLAST of EY753288 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.932e-14
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            +G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H++K
Sbjct:  286 IGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAK 332          
BLAST of EY753288 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.932e-14
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            +G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H++K
Sbjct:  287 IGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAK 333          
BLAST of EY753288 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.932e-14
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 139
            FVGDS SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  359 FVGDSHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 404          
BLAST of EY753288 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.932e-14
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 142
            FVGD+ SSIFDAKAGI LS  FVKL+SWYDNE+GYSTRVVDL+ +++
Sbjct:  287 FVGDAHSSIFDAKAGIQLSPTFVKLISWYDNEFGYSTRVVDLLAYVA 333          
BLAST of EY753288 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 3.932e-14
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            +G++ SSIFD KAGI+L+K FVKLVSWYDNEWGYS RV+DL+ H++K
Sbjct:  287 LGNTNSSIFDIKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLAHVAK 333          
BLAST of EY753288 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            GD  SSIFDAKAGIAL+  FVKLVSWYDNEWGYS RV+DLI ++++
Sbjct:  288 GDPHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVIDLIAYIAQ 333          
BLAST of EY753288 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 139
            FVGD+ SS+FDAKAGI L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  283 FVGDTHSSVFDAKAGIPLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of EY753288 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F G + SSIFD+KAGIA+SK FVKL++WYDNEWGYS RV DL+V+ +K
Sbjct:  285 FTGANESSIFDSKAGIAISKSFVKLIAWYDNEWGYSRRVCDLLVYAAK 332          
BLAST of EY753288 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            G+  SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DLI ++SK
Sbjct:  287 GNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYISK 332          
The following BLAST results are available for this feature:
BLAST of EY753288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
G3P2_RHIRA3.010e-1472.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P_COLLN3.932e-1470.21Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_COLGL3.932e-1470.21Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3PT_MACFA3.932e-1478.26Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P3_RHIRA3.932e-1474.47Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3P2_TRIKO3.932e-1470.21Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P_MONAN5.135e-1473.91Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_GLOMM5.135e-1473.91Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_SCHCO6.707e-1468.75Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_NEUCR6.707e-1476.09Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-A11-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753288 ID=EY753288; Name=EY753288; organism=Citrus sinensis; type=EST; length=449bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGTCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGTGCTAAATGTGGGTGTTGTGTTTCTATGTAGAGGG
TCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCAGAGCCTTACCTG
CTCATGCAGGGTTGTGCTTANATTTTCCCTTGTAGTATGCAGGAAAGAGT
TGGTGAACCAACTTATGTTTTTGTACCGAGAAAACATTGGTCTATTGGAA
ACTGGCTTTTATAATTTTTCATCTAATTAGGATCGAAAAAAAAAAAAAA
back to top