EY753279 | Citrus Genome Database

Overview


Name	EY753279
Unique Name	EY753279
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	898

Libraries


Library Name	Type
Sweet orange leaf, field plant A	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY753279 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 8.537e-66
Identity = 72/101 (71.29%), Postives = 93/101 (92.08%), Query Frame = 2

Query:  371 IRPLGRHYFRNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLALHSLRQRHWYIQSTCATSGEGLYEGLDWLS 673
            IRPL RHY+ NT GLIFVVDSNDR+R+ +AR+ LHRM+NE+EL+DA++LVFANKQDLPNAM+AAE+T+KL L+++R+R+W+IQSTCAT G+GLYEG DWL+
Sbjct:   74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLT 174

HSP 2 Score: 107.071 bits (266), Expect = 8.537e-66
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1

Query:  160 YTKPIHSSIFAKKEMRILMVEIEDTGKTTILYNLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 369
            Y   + + +F KK++RILMV ++  GKTTILY +KLGE+VTTIPTIGFNVETVE++NISFTVWDVGGQDK
Sbjct:    4 YVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDK 73

[Close]

BLAST of EY753279 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 8.537e-66
Identity = 76/107 (71.03%), Postives = 89/107 (83.18%), Query Frame = 2

Query:  371 IRPLGRHYFRNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLALHSLRQRHWYIQSTCATSGEGLYEGLDWLSNTIATK 691
            IRPL RHYF+NTQGLIFVVDSNDR+R+ E    L +ML EDEL+DAVLL+FANKQDLPNAM  +E+TDKL L SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:   74 IRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180

HSP 2 Score: 110.538 bits (275), Expect = 8.537e-66
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 1

Query:  172 IHSSIFAKKEMRILMVEIEDTGKTTILYNLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 369
            + S +F KK+MRILMV ++  GKTTILY LKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDK
Sbjct:    8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDK 73

[Close]

BLAST of EY753279 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 8.537e-66
Identity = 76/107 (71.03%), Postives = 89/107 (83.18%), Query Frame = 2

Query:  371 IRPLGRHYFRNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLALHSLRQRHWYIQSTCATSGEGLYEGLDWLSNTIATK 691
            IRPL RHYF+NTQGLIFVVDSNDR+R+ E    L +ML EDEL+DAVLL+FANKQDLPNAM  +E+TDKL L SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:   74 IRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180

HSP 2 Score: 110.538 bits (275), Expect = 8.537e-66
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 1

Query:  172 IHSSIFAKKEMRILMVEIEDTGKTTILYNLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 369
            + S +F KK+MRILMV ++  GKTTILY LKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDK
Sbjct:    8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDK 73

[Close]

BLAST of EY753279 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 4.130e-59
Identity = 66/102 (64.71%), Postives = 84/102 (82.35%), Query Frame = 2

Query:  371 IRPLGRHYFRNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLALHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 676
            IRPL RHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KL L  +R R+WY+Q +CATSG+GLYEGL WL++
Sbjct:   70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171

HSP 2 Score: 101.293 bits (251), Expect = 4.130e-59
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 1

Query:  178 SSIFAKKEMRILMVEIEDTGKTTILYNLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 369
            S IF  KEMRILM+ ++  GKTTILY LKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDK
Sbjct:    6 SKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDK 69

[Close]

BLAST of EY753279 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.130e-59
Identity = 66/102 (64.71%), Postives = 84/102 (82.35%), Query Frame = 2

Query:  371 IRPLGRHYFRNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLALHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 676
            IRPL RHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KL L  +R R+WY+Q +CATSG+GLYEGL WL++
Sbjct:   70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171

HSP 2 Score: 101.293 bits (251), Expect = 4.130e-59
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 1

Query:  178 SSIFAKKEMRILMVEIEDTGKTTILYNLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 369
            S IF  KEMRILM+ ++  GKTTILY LKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDK
Sbjct:    6 SKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDK 69

[Close]

BLAST of EY753279 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 4.130e-59
Identity = 66/102 (64.71%), Postives = 84/102 (82.35%), Query Frame = 2

Query:  371 IRPLGRHYFRNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLALHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 676
            IRPL RHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KL L  +R R+WY+Q +CATSG+GLYEGL WL++
Sbjct:   70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171

HSP 2 Score: 101.293 bits (251), Expect = 4.130e-59
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 1

Query:  178 SSIFAKKEMRILMVEIEDTGKTTILYNLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 369
            S IF  KEMRILM+ ++  GKTTILY LKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDK
Sbjct:    6 SKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDK 69

[Close]

BLAST of EY753279 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 4.130e-59
Identity = 66/102 (64.71%), Postives = 84/102 (82.35%), Query Frame = 2

Query:  371 IRPLGRHYFRNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLALHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 676
            IRPL RHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KL L  +R R+WY+Q +CATSG+GLYEGL WL++
Sbjct:   70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171

HSP 2 Score: 101.293 bits (251), Expect = 4.130e-59
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 1

Query:  178 SSIFAKKEMRILMVEIEDTGKTTILYNLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 369
            S IF  KEMRILM+ ++  GKTTILY LKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDK
Sbjct:    6 SKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDK 69

[Close]

BLAST of EY753279 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 5.380e-59
Identity = 66/110 (60.00%), Postives = 87/110 (79.09%), Query Frame = 2

Query:  368 NIRPLGRHYFRNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLALHSLRQRHWYIQSTCATSGEGLYEGLDWLSNTIATK 691
            +IRPL RHY++NT  LI+V+DS D +  R+ +A++ELH +L EDELRDA LLVFANKQDLP AM+  ++T++L L  L++R WYIQ TCA SG+GLY+GLDWLS+ I  K
Sbjct:   73 SIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKRDWYIQPTCARSGDGLYQGLDWLSDYIFDK 182

HSP 2 Score: 105.916 bits (263), Expect = 5.380e-59
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 1

Query:  172 IHSSIFAKKEMRILMVEIEDTGKTTILYNLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 366
            I   +F+KKE+RILMV ++  GKTTILY L LGE+VTT+PTIGFNVETVEYKNI+FTVWDVGGQD
Sbjct:    8 IFGKLFSKKEVRILMVGLDAAGKTTILYKLMLGEVVTTVPTIGFNVETVEYKNINFTVWDVGGQD 72

[Close]

BLAST of EY753279 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 9.154e-59
Identity = 65/102 (63.73%), Postives = 84/102 (82.35%), Query Frame = 2

Query:  371 IRPLGRHYFRNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLALHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 676
            IRPL RHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KL L  +R R+WY+Q +CAT+G+GLYEGL WL++
Sbjct:   70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTS 171

HSP 2 Score: 101.293 bits (251), Expect = 9.154e-59
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 1

Query:  178 SSIFAKKEMRILMVEIEDTGKTTILYNLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 369
            S IF  KEMRILM+ ++  GKTTILY LKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDK
Sbjct:    6 SKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDK 69

[Close]

BLAST of EY753279 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.496e-58
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 2

Query:  371 IRPLGRHYFRNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLALHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 676
            IRPL RHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KL L  +R R+WY+Q +CA SG+GLYEGL WL++
Sbjct:   70 IRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAASGDGLYEGLTWLTS 171

HSP 2 Score: 99.7525 bits (247), Expect = 4.496e-58
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1

Query:  178 SSIFAKKEMRILMVEIEDTGKTTILYNLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 369
            S IF  KEMRILM  ++  GKTTILY LKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDK
Sbjct:    6 SKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDK 69

The following BLAST results are available for this feature:

BLAST of EY753279 vs. ExPASy Swiss-Prot

BLAST of EY753279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166


Match Name	E-value	Identity	Description
ARF1_PLAFO	8.537e-66	71.29	ADP-ribosylation factor 1 OS=Plasmodium falciparum...	[more]
ARF4_RAT	8.537e-66	71.03	ADP-ribosylation factor 4 OS=Rattus norvegicus GN=...	[more]
ARF4_MOUSE	8.537e-66	71.03	ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ...	[more]
ARF6_RAT	4.130e-59	64.71	ADP-ribosylation factor 6 OS=Rattus norvegicus GN=...	[more]
ARF6_PIG	4.130e-59	64.71	ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE...	[more]
ARF6_MOUSE	4.130e-59	64.71	ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ...	[more]
ARF6_HUMAN	4.130e-59	64.71	ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ...	[more]
ARF_GIALA	5.380e-59	60.00	ADP-ribosylation factor OS=Giardia lamblia PE=3 SV...	[more]
ARF6_CHICK	9.154e-59	63.73	ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6...	[more]
ARF6_XENLA	4.496e-58	63.73	ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS12-C1-001-001-A02-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY753279 ID=EY753279; Name=EY753279; organism=Citrus sinensis; type=EST; length=898bp
GGTACTGGTNACGCCTGCCCAGTATCGTGTCCGGGATTCCCGGGCTCGAC
ACACGCGGTCCGAAAAAAAAAGGGAAATTGGATCAAATCAATNAGGGTAG
TGCATGGATTTGAATAAATACCACTACCGTTGTTTCTCTGAGCAAAATTG
GTGCTGTGTTATACCAAGCCTATACATTCGAGTATATTTGCAAAGAAGGA
GATGCGAATTCTTATGGTGGAGATTGAGGACACAGGAAAAACCACAATTT
TATATAACCTTAAGTTAGGGGAGATCGTTACCACCATCCCCACCATTGGT
TTCAATGTGGAGACTGTGGAATACAAGAATATTAGCTTCACTGTCTGGGA
TGTTGGAGGTCAAGACAAATATTCGGCCTTTGGGGAGACACTATTTTCGA
AATACACAAGGTCTTATCTTTGTGGTTGACAGCAATGATCGTGACCGTGT
TGTTGAGGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGA
GGGATGCTGTGTTGCTTGTGTTTGCAAACAAACAAGATCTTCCAAATGCA
ATGAATGCTGCCGAGATCACTGACAAGCTTGCCCTTCATTCTCTCCGACA
ACGTCACTGGTATATCCAGAGCACTTGTGCCACTTCTGGAGAAGGGCTCT
ACGAGGGACTAGACTGGCTCTCAAACACCATTGCTACCAAGCCTAAGTGG
ACTAGTTTTAGTCAAGCATTCGGAGACTGAAGTCAGTTGCAATTTATAAA
TGGATTTGCCTAAGTTTTGCTGGAGGTTCTATGCTGTTTATTCGGGATCC
AAGTCTTTAATTGTATGTAGGAAAGCAAGGTTACATTTTTTGGGGGCCCT
TTCTGGATACGGTGGGGGGGAAATCCAAACCTTTAAATTGAAATCCTT